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<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ANGEO</journal-id><journal-title-group>
    <journal-title>Annales Geophysicae</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ANGEO</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Ann. Geophys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1432-0576</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/angeo-38-1171-2020</article-id><title-group><article-title>Analysis of different propagation models for the  estimation<?xmltex \hack{\break}?> of the topside ionosphere and plasmasphere with<?xmltex \hack{\break}?> an ensemble Kalman filter</article-title><alt-title>Analysis of different propagation models</alt-title>
      </title-group><?xmltex \runningtitle{Analysis of different propagation models}?><?xmltex \runningauthor{T.~Gerzen et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Gerzen</surname><given-names>Tatjana</given-names></name>
          <email>tatjana.gerzen@tum.de</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Minkwitz</surname><given-names>David</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Schmidt</surname><given-names>Michael</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Erdogan</surname><given-names>Eren</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7468-0617</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Technical University Munich (TUM), Deutsches Geodätisches
Forschungsinstitut (DGFI), Arcisstraße 21, Munich, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Airbus Defence and Space GmbH, Robert-Koch-Straße 1, Taufkirchen, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Tatjana Gerzen (tatjana.gerzen@tum.de)</corresp></author-notes><pub-date><day>10</day><month>November</month><year>2020</year></pub-date>
      
      <volume>38</volume>
      <issue>6</issue>
      <fpage>1171</fpage><lpage>1189</lpage>
      <history>
        <date date-type="received"><day>3</day><month>June</month><year>2020</year></date>
           <date date-type="rev-request"><day>23</day><month>June</month><year>2020</year></date>
           <date date-type="accepted"><day>15</day><month>September</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2020 </copyright-statement>
        <copyright-year>2020</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://angeo.copernicus.org/articles/.html">This article is available from https://angeo.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://angeo.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://angeo.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e114">The accuracy and availability of satellite-based applications, like Global Navigation Satellite System (GNSS) positioning and remote sensing, crucially depend on the knowledge of the ionospheric electron density distribution. The tomography of the ionosphere is one of the major tools for providing links to specific ionospheric corrections and studying and monitoring physical processes in the ionosphere and plasmasphere. In this work, we apply an ensemble Kalman filter (EnKF) approach for the 4D electron density reconstruction of the topside ionosphere and plasmasphere, with the focus on the investigation of different propagation models, and compare them with the iterative reconstruction technique of simultaneous multiplicative column normalized method plus (SMART<inline-formula><mml:math id="M1" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>). The slant total electron content (STEC) measurements of 11 low earth orbit (LEO) satellites are assimilated into the reconstructions. We conduct a case study on a global grid with altitudes between 430 and 20 200 km, for two periods of the year 2015, covering quiet to perturbed ionospheric conditions. Particularly the performance of the methods for estimating independent STEC and electron density measurements from the three Swarm satellites is analysed. The results indicate that the methods of EnKF, with exponential decay as the propagation model, and SMART<inline-formula><mml:math id="M2" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> perform best, providing, in summary, the lowest residuals.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e142">The ionosphere is the charged part of the upper atmosphere extending from
about 50 to 1000 km and going over in the plasmasphere. The characteristic
property of the ionosphere is that it contains sufficient free electrons to
affect the propagation of trans-ionospheric radio signals from
telecommunication, navigation or remote sensing satellites by refraction,
diffraction and scattering. Therefore, knowledge of the 3D electron density distribution and its dynamics are of practical importance. Around 50 % of the signal delays or range errors of L-band signals used in the Global Navigation Satellite System (GNSS) originate from altitudes above the ionospheric F2 layer, consisting of topside ionosphere and plasmasphere (see Klimenko et al., 2015; Chen and Yao, 2015). So far, especially the topside ionosphere and plasmasphere, has not been well described.</p>
      <p id="d1e145">The choice of the ionospheric correction model has an essential impact on
the accuracy of the estimated ionospheric delay and its uncertainty. A
widely used approach for ionospheric modelling is the single-layer model,
whereby the ionosphere is projected onto a 2D spherical layer, typically located between 350 and 450 km. However, 2D models are usually not accurate enough to support high-accuracy navigation and positioning techniques in real time (see, for example, Odijk, 2002; Banville, 2014). More accurate
and precise positioning is achievable by considering the ionosphere as a 3D
medium. There are several activities in the ionosphere community aiming to
describe the mean ionospheric behaviour by the development of 3D electron
density models based on long-term historical data. Two widely used<?pagebreak page1172?> models
are the International Reference Ionosphere (IRI) model (see Bilitza et al.,
2011) and the NeQuick model (see Nava et al., 2008).</p>
      <p id="d1e148">Since those models represent a mean behaviour, it is essential to update them
by assimilating actual ionospheric measurements. There have been a variety
of approaches developed and validated for ionospheric reconstruction by
the combination of actual observations with an empirical or a physical
background model. Hernandez-Pajares et al. (1999) present one of the first
GNSS-based data-driven tomographic models, which considers the ionosphere as
a grid of 3D voxels, and the electron density within each voxel is computed as a random walk time series. The voxel-based discretization of the ionosphere is further used, for instance, in Heise et al. (2002), Wen et al. (2007), Gerzen and Minkwitz (2016), Gerzen et al. (2017) and
Wen et al. (2020). These authors reconstruct the 3D ionosphere by algebraic
iterative methods. An alternative is to estimate the electron density as a
linear combination of smooth and continuous basis functions, like, for example, spherical harmonics (SPHs; Schaer, 1999), B-splines (Schmidt et al., 2008; Zeilhofer, 2008; Zeilhofer et al., 2009; Olivares-Pulido et al., 2019), B-splines and trigonometric B-splines (Schmidt et al., 2015), B-splines and Chapman functions (Liang et al., 2015, 2016), and empirical orthogonal functions and SPHs (Howe et al., 1998).</p>
      <p id="d1e151">Besides the algebraic methods, other techniques benefitting from information on spatial and temporal covariance information, such as optimal interpolation, the Kalman filter, 3D and 4D variational
techniques and kriging, are applied to update the modelled electron density
distributions (see Howe et al., 1998; Angling et al., 2008; Minkwitz et al.,
2015 and 2016; Nikoukar et al., 2015; Olivares-Pulido et al., 2019).</p>
      <p id="d1e155">Moreover, there are approaches based on physical models which combine the
estimation of the electron density with physically related variables, such as
neutral winds or the oxygen / nitrogen ratio (see Wang, et al., 2004;
Scherliess et al., 2009; Lee et al., 2012; Lomidze et al., 2015; Schunk et
al., 2004, 2016; Elvidge and Angling, 2019).</p>
      <p id="d1e158">In general, the majority of data available for the reconstruction of the
ionosphere and plasmasphere are slant total electron content (STEC)
measurements, i.e. the integral of the electron density along the line of
sight between the GNSS satellite and receiver. Often, STEC measurements
provide limited vertical information, and hence, the modelling of the vertical the electron density distribution is hampered (see, for example, Dettmering, 2003). The estimation of the topside ionosphere and plasmasphere poses a particular difficulty since direct electron density measurements are rare, and low plasma densities at these high altitudes contribute only marginally to the STEC measurements. Ground-based STEC measurements are especially dominated by electron densities within and below the characteristic F2 layer peak. Consequently, information about the plasmasphere is difficult to extract from ground-based STEC measurements (see, for example, Spencer and Mitchell, 2011). Thus, in the presented work, we concentrate on the modelling of the topside part of the ionosphere and plasmasphere and utilize only the space-based STEC measurements.</p>
      <p id="d1e161">In this paper, we introduce an ensemble Kalman filter (EnKF) to estimate the
topside ionosphere and plasmasphere based on space-based STEC measurements.
The propagation of the analysed state vector to the next time step within a
Kalman filter is a key challenge. The majority of the approaches, working
with EnKF variants, use physics-based models for the propagation step (see, for example, Elvidge and Angling, 2019; Codrescu et al., 2018; Lee et al., 2012). In our work, we investigate the question of how the propagation step can be realized if a physical model is not available or if the usage of a physical model is rejected as computationally time consuming. We discretize the ionosphere and the plasmasphere below the GNSS orbit height by 3D voxels,
initialize them with electron densities calculated by the NeQuick model and
update them with respect to the data. We present different methods for how to
perform the propagation step and assess their suitability for the estimation
of electron density. For this purpose, a case study of quiet and perturbed
ionospheric conditions in 2015 is conducted to investigate the capability of
the estimates to reproduce assimilated STEC and to reconstruct
independent STEC and electron density measurements.</p>
      <p id="d1e164">We have organized the paper as follows: Sect. 2 describes the EnKF with the
different propagation methods and the generation of the initial ensembles by
the NeQuick model. Section 3 outlines the validation scenario with the
applied data sets. Section 4 presents the obtained results. Finally, we
conclude our work in Sect. 5 and provide an overview of the next steps.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Estimation of the topside ionosphere and plasmasphere</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Formulation of the underlying inverse problem</title>
      <p id="d1e182">Information about the STEC along the satellite-to-receiver ray path <inline-formula><mml:math id="M3" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula>
can be obtained from multi-frequency GNSS measurements. In detail, STEC is a
function of the electron density <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:math></inline-formula> along the ray path <inline-formula><mml:math id="M5" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula>, given by the following:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M6" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo movablelimits="false">∫</mml:mo><mml:mi>N</mml:mi><mml:mi>e</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>h</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">φ</mml:mi></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">d</mml:mi><mml:mi>s</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mi>e</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>h</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">φ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> is the unknown function
describing the electron density values depending on altitude <inline-formula><mml:math id="M8" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula>, geographic
longitude <inline-formula><mml:math id="M9" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and latitude <inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula>.</p>
      <?pagebreak page1173?><p id="d1e290">The discretization of the ionosphere by a 3D grid and the assumption of a
constant electron density function within a fixed voxel allows the
transformation of Eq. (1) into a linear system of equations as follows:
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M11" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>≈</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>K</mml:mi></mml:msubsup><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>⇒</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="bold">H</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M12" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula> is the (<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>) vector of the STEC measurements, <inline-formula><mml:math id="M14" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> is the
vector of unknown electron densities with <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> equal to the
electron density in the voxel <inline-formula><mml:math id="M16" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the length of the ray path
<inline-formula><mml:math id="M18" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula> in the voxel <inline-formula><mml:math id="M19" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M20" display="inline"><mml:mi mathvariant="bold-italic">r</mml:mi></mml:math></inline-formula> is the vector of measurement errors assumed to be
Gaussian-distributed <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mo>∼</mml:mo><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="bold">0</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="bold">R</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, with the expectation and covariance matrix <inline-formula><mml:math id="M22" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Background model</title>
      <p id="d1e481">As a regularization of the inverse problem in Eq. (2), a background model often provides the initial guess of the state vector <inline-formula><mml:math id="M23" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>. In this study, we apply the NeQuick model (version 2.0.2). The NeQuick model was developed at the International Centre for Theoretical Physics (ICTP) in Trieste, Italy, and at the University of Graz, Austria (see Hochegger et al., 2000; Radicella and Leitinger, 2001; Nava et al., 2008). The daily solar flux index of F10.7 is used to drive the NeQuick model.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Analysis step of the EnKF</title>
      <p id="d1e499">We apply EnKF to solve the inverse problem defined in Sect. 2.1. Evensen (1994) introduces the EnKF as an alternative to the standard Kalman filter (KF) in order to cope with the non-linear propagation dynamics and the large dimension of the state vector and its covariance matrix. In an EnKF, a collection of realizations, called ensembles, represent the state vector <inline-formula><mml:math id="M24" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and its distribution.</p>
      <p id="d1e509">Let <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msubsup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>N</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> be a <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold">N</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> matrix in which the columns are the ensemble members, ideally following the a priori distribution of the state vector <inline-formula><mml:math id="M27" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>. Furthermore, the observations collected in <inline-formula><mml:math id="M28" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula> are treated as random variables. Therefore, we define an (<inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>×</mml:mo><mml:mi>N</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> ensemble of observations <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>N</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">ϵ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and a random vector <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from the normal distribution <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>R</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e681">We define the ensemble covariance matrix <inline-formula><mml:math id="M34" display="inline"><mml:mi mathvariant="bold">P</mml:mi></mml:math></inline-formula> around the ensemble mean <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> as follows:
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M36" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{8.7}{8.7}\selectfont$\displaystyle}?><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>N</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:mfenced open="{" close="}"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mo>.</mml:mo><?xmltex \hack{$\egroup}?></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e819">In the analysis step of the EnKF, the a priori knowledge of the state vector
<inline-formula><mml:math id="M37" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> and its covariance matrix <inline-formula><mml:math id="M38" display="inline"><mml:mi mathvariant="bold">P</mml:mi></mml:math></inline-formula> is updated by the following:
            <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M39" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:msup><mml:mi mathvariant="bold">H</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="bold">R</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">HP</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:msup><mml:mi mathvariant="bold">H</mml:mi><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⋅</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="bold">Y</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">HX</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the matrix <inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> represents the a posteriori ensembles and, hence, the a posteriori state vector.</p>
      <p id="d1e915">For the propagation of the analysed solution to the next time step, we test
different propagation models described in Sect. 2.4. In order to generate the initial ensembles <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, we use the NeQuick model and describe the procedure in Sect. 2.5. Keeping in mind that we
have to deal with an extremely large state vector (details are presented in
Sect. 3.1), the important advantage of the EnKF for the present study is
that there is no need to explicitly calculate the ensemble covariance
matrix (see Eq. 3). Instead, to perform the analysis step in Eq. (4), we follow the implementation suggested by Evensen (2003).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Considered models for the propagation step of the EnKF</title>
      <p id="d1e944">In this section, we introduce different models to propagate the analysed
solution to the next time step. With all of them, we propagate the ensembles
20 min in time. Generally, these propagation models can be described as
<inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mi>F</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi>F</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>F</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>. In the
following subsections, we outline possible choices of the model <inline-formula><mml:math id="M43" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula>, the
systematic error <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi>F</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the process noise <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>F</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1055">Note that, beyond the presented methods, we had additionally tested a propagation model based on persistence, i.e. <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">persis</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">persis</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>. Already after a time period of about 24 h, this method had
shown unreasonable effects in the reconstructions, like a completely
misplaced equatorial crest region.</p>
<sec id="Ch1.S2.SS4.SSS1">
  <label>2.4.1</label><title>Method 1: rotation</title>
      <p id="d1e1140">The method rotation assumes that, in geomagnetic coordinates, the ionosphere
remains invariant in space while the Earth rotates below it (see Angling and
Cannon, 2004). Thus, we propagate the analysed ensemble <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> from time <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to the next time step <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> by the following:
              <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M50" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e1249">To calculate rot<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, the geomagnetic longitude is changed, corresponding to the evolution time <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, i.e. 5<inline-formula><mml:math id="M53" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> of longitude per 20 min. <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
denotes the systematic error introduced by approximation of the true
propagation of <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> by a simple rotation. We tested the following estimation of <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> here:
              <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M57" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">ratio</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">ϵ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            with
              <disp-formula id="Ch1.E7" content-type="numbered"><label>7</label><mml:math id="M58" display="block"><mml:mrow><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mi mathvariant="bold-italic">a</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mi mathvariant="bold-italic">i</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">o</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is the electron density vector calculated by the NeQuick model and <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">ϵ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is a <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> matrix of ones. The division in the second equation is element wise. The ratio of <inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mi mathvariant="bold-italic">a</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mi mathvariant="bold-italic">i</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">o</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> in Eq. (7)
represents the relative error introduced by the application of  rot<inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> instead of <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>.
In this way, we obtain, in Eq. (6), an approximation of the mean error
introduced by the approximation of the true state at time <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> by the
rotation of the true state at time <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The factor <inline-formula><mml:math id="M67" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:mfrac></mml:mstyle></mml:math></inline-formula> has
been chosen empirically as the result of an internal validation not
presented within this paper.</p>
</sec>
<?pagebreak page1174?><sec id="Ch1.S2.SS4.SSS2">
  <label>2.4.2</label><title>Method 2: exponential decay</title>
      <p id="d1e1680">Here we assume the electron density differences between the voxels of the
analysis and the background model to be a first-order Gauss–Markov sequence.
These differences are propagated in time by an exponential decay function
(see Nikoukar et al., 2015; Bust and Mitchell, 2008; Gerzen et al., 2015).
              <disp-formula id="Ch1.E8" content-type="numbered"><label>8</label><mml:math id="M68" display="block"><mml:mtable columnspacing="1em" class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mi>t</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> is the ensemble of electron density vectors calculated by the NeQuick model for the time <inline-formula><mml:math id="M70" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>, as described in Sect. 2.5, <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mi mathvariant="italic">τ</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M73" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> denotes the temporal correlation parameter chosen here as being 3 h.</p>
      <p id="d1e1889">Note that, similar to the method described here, we also tested the application of rot<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mfenced close="]" open="["><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mfenced></mml:mrow></mml:math></inline-formula> instead of <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mfenced open="[" close="]"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> in Eq. (8). The results were similar and are therefore not presented here.</p>
</sec>
<sec id="Ch1.S2.SS4.SSS3">
  <label>2.4.3</label><title>Method 3: rotation with exponential decay</title>
      <p id="d1e1970">For the third method, we define the propagation model as a combination of
the propagation models described in the previous subsections, in particular, as the following:
              <disp-formula id="Ch1.E9" content-type="numbered"><label>9</label><mml:math id="M76" display="block"><mml:mtable rowspacing="0.2ex" class="split" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">ϵ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced open="(" close=")"><mml:mfenced open="[" close="]"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">ϵ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mfenced><mml:mo>+</mml:mo><mml:mi mathvariant="bold">W</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:msqrt><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">20</mml:mn></mml:mfrac></mml:mstyle></mml:msqrt><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">exp</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d1e2151">The systematic error <inline-formula><mml:math id="M77" display="inline"><mml:mi mathvariant="bold">W</mml:mi></mml:math></inline-formula> is estimated as follows:
              <disp-formula id="Ch1.E10" content-type="numbered"><label>10</label><mml:math id="M78" display="block"><mml:mrow><mml:mi mathvariant="bold">W</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">8</mml:mn><mml:mn mathvariant="normal">10</mml:mn></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2225">Thereby, <inline-formula><mml:math id="M79" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are defined as in the two previous sections. The factor <inline-formula><mml:math id="M81" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">8</mml:mn><mml:mn mathvariant="normal">10</mml:mn></mml:mfrac></mml:mstyle></mml:math></inline-formula> is, thereby, again chosen empirically. The process noise <inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">exp</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is assumed to be white, with <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">exp</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>⋅</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi mathvariant="normal">exp</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>. Here the matrix
<inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> consists of random realizations of the
distribution <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="bold">0</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="bold">Σ</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> with the following:
              <disp-formula id="Ch1.E11" content-type="numbered"><label>11</label><mml:math id="M86" display="block"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow><mml:mi mathvariant="normal">Rot</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="normal">ratio</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mfenced open="{" close="}"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">ratio</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> increases continuously, depending on the altitude of the voxel <inline-formula><mml:math id="M88" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> from <inline-formula><mml:math id="M89" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">0.5</mml:mn><mml:mn mathvariant="normal">100</mml:mn></mml:mfrac></mml:mstyle></mml:math></inline-formula> for lower altitudes to <inline-formula><mml:math id="M90" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">100</mml:mn></mml:mfrac></mml:mstyle></mml:math></inline-formula> for the higher altitudes (chosen empirically), and <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> denotes the ensemble mean vector. Equations (9) and (11) can be interpreted as follows: for the chosen time step of 20 min, the standard deviation of the time model error regarding the voxel <inline-formula><mml:math id="M92" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> is equal to <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msqrt><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow><mml:mi mathvariant="normal">rot</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:msqrt><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">ratio</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mfenced open="{" close="}"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Rot</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, varying between 0.5 % and 1 % of the corresponding analysed electron density in the voxel <inline-formula><mml:math id="M94" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>. In detail, we generate, at each time step, a new vector <inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>∼</mml:mo><mml:mi>N</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, and calculate the
<inline-formula><mml:math id="M97" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>th row <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">ω</mml:mi><mml:mi>i</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
              <disp-formula id="Ch1.E12" content-type="numbered"><label>12</label><mml:math id="M100" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">ω</mml:mi><mml:mi>i</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:msub><mml:mi mathvariant="bold">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi mathvariant="normal">rot</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:msqrt><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">ρ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2774">The matrix <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi mathvariant="normal">exp</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> consists of random realizations (different for each time step) consistent with the a priori covariance matrix <inline-formula><mml:math id="M102" display="inline"><mml:mi mathvariant="bold">L</mml:mi></mml:math></inline-formula> of the errors of the background <inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> (see Howe and Runciman, 1998). In detail, this means that the a priori covariance is assumed to be diagonal, and <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">L</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> equals the square of 1 % of the corresponding background model value. Then the <inline-formula><mml:math id="M105" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>th row of <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi mathvariant="normal">exp</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is calculated by Eq. (13) as follows:
              <disp-formula id="Ch1.E13" content-type="numbered"><label>13</label><mml:math id="M107" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:msub><mml:mi mathvariant="bold">L</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:msqrt><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">ρ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Generation of the ensembles</title>
      <p id="d1e2943">In order to generate the ensembles, we vary the F10.7 input parameter of the
NeQuick model (see Sect. 2.2). First, we analysed the sensitivity of the NeQuick model to F10.7. Based on the results, we calculate a vector <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mi mathvariant="normal">F</mml:mi><mml:mn mathvariant="normal">10.7</mml:mn><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of the solar radio flux index, with <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">F</mml:mi><mml:mn mathvariant="normal">10.7</mml:mn><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:mi mathvariant="normal">F</mml:mi><mml:mn mathvariant="normal">10.7</mml:mn><mml:mfenced close=")" open="("><mml:mi>t</mml:mi></mml:mfenced><mml:mo>∼</mml:mo><mml:mi>N</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">F</mml:mi><mml:mn mathvariant="normal">10.7</mml:mn><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">3</mml:mn><mml:mn mathvariant="normal">100</mml:mn></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">F</mml:mi><mml:mn mathvariant="normal">10.7</mml:mn><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> at time <inline-formula><mml:math id="M111" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>. The vector <inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mi mathvariant="normal">F</mml:mi><mml:mn mathvariant="normal">10.7</mml:mn></mml:mrow></mml:math></inline-formula> serves as input for the NeQuick model to calculate the 100 ensembles of <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> during the considered period and the initial guess of the electron densities <inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3090">An example of the variation of the generated ensembles is provided by
Fig. 1. Particularly, we show, in this figure, the distribution of the differences between the ensemble of electron densities <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mi>t</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> and the NeQuick model values for the day of year (DOY) 041 and 076. The residuals are depicted for a selected altitude and chosen universal times (UTs) and are presented through different colours (see the subfigure history). In addition, the mean, the standard deviation (SD) and the root mean square (RMS) of the residuals are presented in the subplots.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e3109">The distribution of the ensemble residuals for a chosen altitude
and selected universal times (UTs), for all latitudes and longitudes, with panel <bold>(a)</bold> showing the day of the year (DOY) 041 and <bold>(b)</bold> showing DOY 076.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f01.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS6">
  <label>2.6</label><?xmltex \opttitle{Provision of a benchmark by the simultaneous multiplicative column normalized method plus (SMART$+$)}?><title>Provision of a benchmark by the simultaneous multiplicative column normalized method plus (SMART<inline-formula><mml:math id="M116" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>)</title>
      <p id="d1e3140">In order to provide a benchmark for the described methods, we apply SMART<inline-formula><mml:math id="M117" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>
as an additional reconstruction technique. The simultaneous multiplicative column normalized method plus (SMART<inline-formula><mml:math id="M118" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>) is a combination of an
iterative simultaneous multiplicative column normalized method (SMART; see
Gerzen and Minkwitz, 2016) and a 3D successive correction method (3D SCM)
(see, for example, Kalnay, 2011; Gerzen and Minkwitz, 2016). As a first step, SMART<?pagebreak page1175?> distributes the STEC measurements among the electron densities in the
ray-path-intersected voxels. For a voxel <inline-formula><mml:math id="M119" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, the multiplicative
innovation is calculated as a weighted mean of the ratios between the actual
measurements and the currently expected measurements. The weights are given
by the length of the ray path corresponding to the measurement in the voxel
<inline-formula><mml:math id="M120" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> divided by the sum of lengths of all rays crossing the voxel <inline-formula><mml:math id="M121" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>.
Consequently, only voxels intersected by at least one measurement are
innovated during the SMART procedure. Thereafter, assuming non-zero
correlations between the ray path intersected voxels and those not
intersected by any STEC, an extrapolation is done from intersected to not
intersected voxels. For this purpose, one iteration of the 3D SCM is
applied. For more details, we refer readers to Gerzen and Minkwitz (2016) and Gerzen et al. (2017).</p>
      <p id="d1e3178">For SMART<inline-formula><mml:math id="M122" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>, the number of iterations at each time step is set to 25, and the correlation coefficients are chosen as described in Gerzen and Minkwitz (2016). For each time step, SMART<inline-formula><mml:math id="M123" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> reconstructs the electron densities based on the background model (here NeQuick) and the currently available measurements. In other words, there is no propagation of the estimated electron densities from a time step <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to the time step <inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Validation scenario</title>
      <p id="d1e3231">Within this study, the EnKF with different propagation methods is
applied and validated for the tomography of the topside ionosphere and
plasmasphere. Two periods with quiet (DOY 041–059 in 2015) and perturbed (DOY 074–079 in 2015) ionospheric conditions are analysed. In this scope, we
investigate the ability to reproduce assimilated STEC and to estimate
independent STEC measurements and in situ electron density measurements of
the Swarm Langmuir probes (LPs). In addition, we apply the tomography
approach SMART<inline-formula><mml:math id="M126" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> (see Sect. 2.6) to provide a benchmark.</p>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Reconstruction area</title>
      <p id="d1e3248">We estimate the electron density over the entire globe, with a spatial
resolution of 2.5<inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in geodetic latitude and longitude. Altitudes
between 430 and 20 200 km are reconstructed where the resolution equals
30 km for altitudes from 430 to 1000 km and decreases exponentially with
increasing altitude for altitudes above 1000 km, i.e. 42 altitudes in total.
Consequently, the number of unknowns is <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mi>K</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">217</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">728</mml:mn></mml:mrow></mml:math></inline-formula>. The temporal
resolution <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> is set to 20 min.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Ionospheric conditions in the considered periods</title>
      <p id="d1e3293">We use the solar radio flux of F10.7, the global planetary 3 h index Kp and the geomagnetic disturbance storm time (DST) index to characterize the
ionospheric conditions during the periods of DOY 041–059 and DOY 074–079 in
2015. In the February period (DOY 041–059 in 2015), the ionosphere is evaluated as being quiet, with F10.7 solar flux unit (sfu) range between 108 and 137s, a Kp index below 6 (on 2 d between 4 and 6; below 4 during the rest of the period) and DST values between 20 and <inline-formula><mml:math id="M130" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>60 nT. The period on 17 March (DOY 076) 2015 is known as the St Patrick's Day storm. The F10.7 value equals <inline-formula><mml:math id="M131" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 116 sfu on DOY 075 and <inline-formula><mml:math id="M132" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 113 sfu on DOY 076, the Kp index is below 5 on DOY 075 and increases to 8 on DOY 076, and DST drops down to <inline-formula><mml:math id="M133" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>200 nT on DOY 076.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Data</title>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>STEC measurements</title>
      <p id="d1e3339">As input for the tomography approaches and for the validation, we use
space-based calibrated STEC measurements of the following low earth orbit (LEO) satellite missions: COSMIC, Swarm, TerraSAR-X, MetOpA and MetOpB and GRACE. Please note that, in 2015, the orbit height of the COSMIC and MetOp satellites was <inline-formula><mml:math id="M134" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 800 km, the orbit height of the Swarm B and TerraSAR-X satellites was <inline-formula><mml:math id="M135" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 500 km, and the Swarm C satellite was <inline-formula><mml:math id="M136" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 460 km. The STEC measurements of Swarm A and GRACE are used
for the validation only. The Swarm A satellite flew side by side with the
Swarm C satellite at around 460 km height. The height of the GRACE orbit was
around 430 km. All satellites flew at almost polar orbits. More information
about the LEO satellites may be found on the following web pages:
<list list-type="bullet"><list-item>
      <p id="d1e3365">COSMIC, available at:  <uri>https://www.nasa.gov/directorates/heo/scan/services/missions/earth/COSMIC.html</uri> (last access: 2 November 2020).</p></list-item><list-item>
      <p id="d1e3372">Swarm, available at: <uri>https://www.esa.int/Applications/Observing_the_Earth/Swarm</uri>
(last access: 2 November 2020).</p></list-item><list-item>
      <p id="d1e3379">TerraSAR-X, available at: <uri>https://earth.esa.int/web/eoportal/satellite-missions/t/terrasar-x</uri>
(last access: 2 November 2020).</p></list-item><list-item>
      <p id="d1e3386">MetOpA and MetOpB, available at: <uri>https://directory.eoportal.org/web/eoportal/satellite-missions/m/metop</uri>
(last access: 2 November 2020).</p></list-item><list-item>
      <p id="d1e3393">GRACE, available at: <uri>https://www.nasa.gov/mission_pages/Grace/index.html</uri>
(last access: 2 November 2020).</p></list-item></list></p>
      <p id="d1e3399">The STEC measurements of the Swarm satellites are available at <uri>https://swarm-diss.eo.esa.int/</uri>, last access: 2 November 2020, and the STEC measurements of the other
satellite missions are available at <uri>http://cdaac-www.cosmic.ucar.edu/cdaac/tar/rest.html</uri>, last access: 2 November 2020. Both data providers also supply information on the accuracy of the STEC data. We utilize this information to fill the covariance matrix <inline-formula><mml:math id="M137" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula> of the measurement errors. The collected STEC data are checked for plausibility before the assimilation.</p>
</sec>
<?pagebreak page1176?><sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>In situ electron density measurements from the Swarm Langmuir probes</title>
      <p id="d1e3423">The LPs on board the Swarm satellites provide in situ electron density
measurements, with a time resolution of 2 Hz. For the present study, the LP
in situ data are acquired from <uri>https://swarm-diss.eo.esa.int/</uri>, last access: 2 November 2020.
In addition, further information on the preprocessing of the LP data is
made available on this website.</p>
      <p id="d1e3429">Lomidze et al. (2018) assess the accuracy and reliability of the LP data
(December 2013 to June 2016) by nearly coincident measurements from low- and
mid-latitude incoherent scatter radars, low-latitude ionosondes and
COSMIC satellites, which cover all latitudes. The comparison results for
each Swarm satellite are consistent across these different measurement
techniques. The results show that the Swarm LPs underestimate the electron
density systematically by about 10 %.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Results</title>
      <p id="d1e3443">In this section, the different methods are presented with the following
colour code: blue for the method rotation, green for the method exponential
decay, light blue for the method rotation with exponential decay and magenta
for NeQuick and red for SMART<inline-formula><mml:math id="M138" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>. The legends in the figures are the
following: “Rot” for the method rotation, “Exp” for the method
exponential decay and “Rot and Exp” for the method rotation with exponential decay.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e3455">Rotation with exponential decay reconstructed electron density, represented by layers at different heights between 490 and 827 km <bold>(a)</bold> and at chosen longitudes for altitudes between 827 and 2400 km
<bold>(b)</bold>. The vertical total electron content (TEC) map deduced from the reconstructed <bold>(c)</bold> and NeQuick-modelled <bold>(d)</bold> 3D electron density in the altitude range between 450 and 20 200 km.</p></caption>
        <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f02.png"/>

      </fig>

<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Reconstructed electron densities</title>
      <p id="d1e3483">At the end of each EnKF analysis step, we have, for each of the considered
methods, 100 ensembles representing the electron density values within the
voxels. The EnKF-reconstructed electron densities are then calculated as the
ensemble mean. Figure 2a and b present the electron densities reconstructed by the method rotation with exponential decay, i.e. <inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mrow><mml:mi mathvariant="normal">Rot</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">and</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Exp</mml:mi></mml:mrow><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>,
for <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, corresponding to DOY 076 at 19:00 UT. Figure 2a shows the horizontal layers of the topside ionosphere at different
heights between 490 and 827 km. Figure 2b illustrates the plasmasphere for altitudes between 827 and 2400 km at selected longitudes. Figure 2c and d show the vertical total electron content (VTEC) maps deduced from the 3D electron density in the considered altitude range between 430 and 20 200 km, where Fig. 2c represents the reconstructed values, and Fig. 2d shows the VTEC calculated from the NeQuick model. It is observed that the reconstructed VTEC values are slightly higher than the ones of the NeQuick model.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e3530">Method rotation reconstructed electron density represented by
layers at different heights between 490 and 827 km <bold>(a)</bold>, and a vertical TEC map deduced from the reconstructed 3D electron density in the altitude range between 450 and 20 200 km <bold>(b)</bold>.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f03.png"/>

        </fig>

      <p id="d1e3545">Figure 3 displays the electron density layers
reconstructed by the method rotation, i.e. <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">Rot</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, for <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, corresponding to DOY 076 at 19:00 UT.
Again, reconstructed electron densities at heights between 490 and 827 km
(Fig. 3a) and the corresponding VTEC map deduced from the reconstructed 3D
electron density (Fig. 3b) are depicted. All reconstructed values seem to be
plausible, showing, as expected, the crest region, low electron densities in
the polar regions, etc. The method rotation delivers much higher values than
the NeQuick model (see Fig. 2). In Fig. 4, we take a closer look at the differences between the modelled and reconstructed electron densities.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e3587">Reconstructed minus NeQuick-modelled electron density represented
by layers at different heights between 490 and 827 km. <bold>(a)</bold> Rotation with exponential decay. <bold>(b)</bold> Rotation. <bold>(c)</bold> Exponential decay. <bold>(d)</bold> SMART<inline-formula><mml:math id="M143" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f04.png"/>

        </fig>

      <p id="d1e3615">In the following, we discuss Figs. 4–7 in order to understand the deviations between the reconstructions produced by the different methods. In
Fig. 4, the differences between the reconstructed and the modelled electron densities, i.e. <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, are shown for all methods, namely rotation with exponential decay, rotation, exponential decay and SMART<inline-formula><mml:math id="M145" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> (see Fig. 4a–d) on DOY 076 at 19:00 UT. In addition, Fig. 5 expresses these differences in percent. Please note the different ranges of the colour bars for the subfigures. Figure 6 illustrates the orbits of the LEO satellites for the STEC measurements used for the reconstructions on DOY 076, at 19:00 UT (Fig. 6a) and the corresponding ground track (Fig. 6b). The
highest differences are observed for the methods of rotation and exponential
decay, whereas the method rotation with exponential decay yields the
smallest differences. Furthermore, as expected, the EnKF approaches provide
smooth and coherent patterns of differences in the ionization. On the contrary, the complementary approach of SMART<inline-formula><mml:math id="M146" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> has rather small patterns in areas where measurements are available and falls back to the background model in areas without measurements in the surroundings. In this context, the correlation lengths between the electron<?pagebreak page1178?> densities are of importance. These correlation lengths are set empirically in SMART<inline-formula><mml:math id="M147" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>, whereas EnKF establishes them automatically, i.e. without setting or estimating them explicitly as, for instance, in SMART<inline-formula><mml:math id="M148" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> or kriging approaches. For a comprehensive evaluation of the quality of the different reconstructions in the context of the used correlation lengths, future analyses with further validation data and dependence on the coincidences between the measurement geometry and the
geometry of the validation data set are necessary.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e3684">Differences between reconstructed and NeQuick-modelled electron
density in percent, represented by layers at different heights between 490
and 827 km. <bold>(a)</bold> Rotation with exponential decay. <bold>(b)</bold> Rotation. <bold>(c)</bold> Exponential decay. <bold>(d)</bold> SMART<inline-formula><mml:math id="M149" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e3714">The locations of the LEO satellites for the STEC measurements used
in the reconstruction.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f06.png"/>

        </fig>

      <p id="d1e3723">Taking into account the differences in Fig. 5, for instance around 120<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E, and the measurement geometry in Fig. 6, it is evident that the estimates of the EnKF are not only based on the current measurements but also on a priori information obtained from assimilations before DOY 076 in 2015 at 19:00 UT. This is, of course, not the case for SMART<inline-formula><mml:math id="M151" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>.</p>
      <p id="d1e3743">In order to supplement the understanding of the differences between the
propagation methods, Fig. 7a, c and e present the differences <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">method</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">method</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>,
and the percentage differences <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mo>⋅</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">method</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">method</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">method</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">method</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> are shown in Fig. 7b, d and f for <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> corresponding to DOY 076 at 19:00 UT. Particularly, the methods (from top to bottom) of rotation with exponential decay, rotation and exponential decay are presented. The differences for the methods rotation and rotation with exponential decay clearly indicate the rotation of the crest region (see also Fig. 3). The method rotation with exponential decay works less rigorously in the rotation than the method rotation since it is anchored by the background model, and the rotation of the differences <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">X</mml:mi><mml:mi>a</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is damped by the exponential decay function; see Eq. (9). Contrary to these two methods, the method of exponential decay tries to propagate the difference <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> to the next time step and add it to the background<inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>. Hence, we observe in Fig. 7e a similar
pattern to that seen in the corresponding subplot of Fig. 4c.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e4023"><bold>(a, c, e)</bold> Differences between the forecasted and analysed electron densities, represented by layers at different heights between 490 and 827 km. <bold>(b, d, f)</bold> Differences in percent. <bold>(a, b)</bold> Method rotation with exponential decay. <bold>(c, d)</bold> Rotation. <bold>(e, f)</bold> Exponential decay.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f07.png"/>

        </fig>

      <p id="d1e4046">In conclusion, the different behaviour of the propagation methods, in
combination with the sparse measurement geometry, might serve as an
explanation for the substantial differences observed in the VTEC maps shown
in Figs. 2 and 3.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Plausibility check by comparison with assimilated STEC</title>
      <?pagebreak page1179?><p id="d1e4058">In this section, we check the ability of the methods to reproduce the
assimilated STEC measurements. For that purpose, we calculate STEC along a
ray path, <inline-formula><mml:math id="M158" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>, for all ray path geometries using the estimated 3D electron
densities, denoted as <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, and compare them with the measured STEC, <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, used for the reconstruction. Then, the mean deviation <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> between the measurements <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> and the estimate <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is calculated for each of the considered methods according to the following:
            <disp-formula id="Ch1.E14" content-type="numbered"><label>14</label><mml:math id="M164" display="block"><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>m</mml:mi></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>m</mml:mi></mml:msubsup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>|</mml:mo><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>|</mml:mo></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          where <inline-formula><mml:math id="M165" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula> is the number of assimilated measurements. <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> is calculated at each epoch <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. In terms of the notation used for the Eqs. (1)–(4), we can reformulate the above formula for the mean deviation as  follows:
            <disp-formula id="Ch1.E15" content-type="numbered"><label>15</label><mml:math id="M168" display="block"><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>m</mml:mi></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>m</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mrow><mml:mo>|</mml:mo><mml:msub><mml:mi>y</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi>a</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold">H</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mtext>with</mml:mtext><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="bold">H</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>j</mml:mi><mml:mi mathvariant="normal">th</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">row</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">of</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="bold">H</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
      <?pagebreak page1180?><p id="d1e4375"><?xmltex \hack{\newpage}?>Furthermore, we consider the RMS of the deviations, in detail, as follows:
            <disp-formula id="Ch1.E16" content-type="numbered"><label>16</label><mml:math id="M169" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.5}{9.5}\selectfont$\displaystyle}?><mml:mi mathvariant="normal">RMS</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>m</mml:mi></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>m</mml:mi></mml:munderover><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mo>|</mml:mo><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>|</mml:mo></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msqrt><?xmltex \hack{$\egroup}?><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e4458">To calculate <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M171" display="inline"><mml:mi mathvariant="normal">RMS</mml:mi></mml:math></inline-formula>, the same
measurements are used as for the reconstruction. In this sense, the results
presented in Figs. 8–12 serve as a plausibility check, testing
the ability of the methods to reproduce the assimilated TEC.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e4481">Plausibility check of the residuals calculated as measured STEC minus estimated STEC. <bold>(a)</bold> Residuals of the quiet period and <bold>(b)</bold> for the perturbed period.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f08.png"/>

        </fig>

      <p id="d1e4496">Figure 8a and b depict the distribution of the residuals for the quiet period and for the perturbed period respectively. The corresponding residual median, standard deviation (SD) and root mean square (RMS) values are also presented in the Fig. 8. It is worth mentioning here that, during the quiet period, the measured STEC is below 150 total electron content unit (TECU). For all DOYs of the perturbed period, except for DOY 076, the measured STEC is below <inline-formula><mml:math id="M172" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 130 TECU. On DOY 076, the STEC values rise up to 370 TECU.</p>
      <p id="d1e4506">The NeQuick model seems to underestimate the measured topside ionosphere and
plasmasphere STEC during both periods. During both periods, SMART<inline-formula><mml:math id="M173" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> seems
to perform best, followed by the method rotation. However, rotation produces
higher SD and RMS values. Compared to the NeQuick residuals, SMART<inline-formula><mml:math id="M174" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> is
able to reduce the median of the residuals by up to 86 % during the
perturbed period and up to 79 % during the quiet period. The RMS is reduced by up to 48 % and the SD by up to 41 %. Rotation reduces the NeQuick median by up to 83 % and the RMS by up to 27 %, and the SD value is almost on the same level as for NeQuick. The method exponential decay is able to decrease the median of the NeQuick residuals by up to 54 %, the RMS by up to 25 % and the SD values by up to 13 %. The method rotation with exponential decay performs similarly to the NeQuick model. The latter could indicate that the parameters chosen for the error terms and weighting in Eq. (9) could still be improved, although an extensive validation of these parameters was<?pagebreak page1181?> performed prior to the analyses presented in this paper, and the best configuration was selected.</p>
      <p id="d1e4523">Interestingly, the median values are higher during the quiet period, while
the SD values are on the same level when compared between perturbed and quiet
periods. The reason, therefore, is probably that the assimilated STEC values
have, on average, lower magnitude during the days in the perturbed period
compared to those during the quiet period (which explains the lower median),
except for the storm on DOY 076, while on DOY 076 they are significantly higher (which explains the comparable SD).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e4528">Plausibility check for the quiet period. <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula>
values versus time.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f09.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e4550">Plausibility check for the perturbed period. <inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> values versus time.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f10.png"/>

        </fig>

      <p id="d1e4569">Figures 9 and 10 plot <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> values versus time for the selected periods. Noticeable is the increase in <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> during the storm on DOY 76. During the rest of the period, <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> is below 8 TECU. During both periods, SMART<inline-formula><mml:math id="M180" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> generates the lowest <inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> values. <inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> of the methods rotation and exponential decay are, in most of the cases, higher than SMART<inline-formula><mml:math id="M183" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> delta STEC values and lower than the NeQuick model. <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> of the method rotation with exponential decay is similar to the NeQuick model.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e4649">Plausibility check for the quiet period. Distributions of the
delta STEC <bold>(a)</bold> and RMS STEC <bold>(b)</bold> values.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f11.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><label>Figure 12</label><caption><p id="d1e4666">Plausibility check for the perturbed period. Distributions of
the delta STEC <bold>(a)</bold> and RMS STEC <bold>(b)</bold> values.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f12.png"/>

        </fig>

      <p id="d1e4681">Figures 11 and  12 present the distribution of <inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> and the <inline-formula><mml:math id="M186" display="inline"><mml:mi mathvariant="normal">RMS</mml:mi></mml:math></inline-formula> error (see Eq. 15) for the quiet and perturbed periods respectively. Figure 11 confirms the conclusions we have drawn so far from Figs. 8 and 9. SMART<inline-formula><mml:math id="M187" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> delivers the lowest <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M189" display="inline"><mml:mi mathvariant="normal">RMS</mml:mi></mml:math></inline-formula> values, followed by the method rotation and then by the method exponential decay. Rotation with exponential decay performs similarly to the NeQuick model. For the perturbed period, SMART<inline-formula><mml:math id="M190" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> again delivers the lowest <inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">STEC</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M192" display="inline"><mml:mi mathvariant="normal">RMS</mml:mi></mml:math></inline-formula> statistics, followed by the exponential decay and the rotation, with similar results.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>Validation with independent space-based STEC data</title>
      <p id="d1e4758">In order to validate the methods with respect to their capability to
estimate independent STEC, the LEO satellites of Swarm A and GRACE have been
used. The STEC measurements of these satellites are not assimilated by the
tested methods.</p>
      <?pagebreak page1182?><p id="d1e4761">For each of the three LEO satellites, the residuals between <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> are calculated and denoted as  <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:mi mathvariant="normal">dTEC</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="normal">STEC</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>.
Furthermore, the absolute values of the residuals <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">dTEC</mml:mi><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> are considered.</p>
      <p id="d1e4820">In general, for the quiet period, the STEC measurements of Swarm A vary
below 105 TECU, and they are below 170 TECU for the second period. For the GRACE satellite, the STEC measurements are below 282 TECU for the quiet period and below 264 TECU for the second period.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><?xmltex \currentcnt{13}?><label>Figure 13</label><caption><p id="d1e4826">Histograms of the STEC residuals <bold>(a)</bold> and absolute residuals
<bold>(b)</bold> during the quiet period for Swarm A.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f13.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><label>Figure 14</label><caption><p id="d1e4843">Histograms of the STEC residuals <bold>(a)</bold> and absolute residuals
<bold>(b)</bold> during the quiet period for GRACE.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f14.png"/>

        </fig>

      <p id="d1e4858">Figures 13 and 14 display the histograms of the STEC residuals during the quiet period for Swarm A and GRACE respectively. Presented are the distributions of the residuals dTEC and the absolute residuals <inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">dTEC</mml:mi><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula>. Also plotted are the median, SD and RMS of the corresponding residuals. Figures 15 and 16 depict the histograms of the STEC residuals during the perturbed period.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15" specific-use="star"><?xmltex \currentcnt{15}?><label>Figure 15</label><caption><p id="d1e4875">Histograms of the STEC residuals <bold>(a)</bold> and absolute residuals
<bold>(b)</bold> during the perturbed period for Swarm A.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f15.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16" specific-use="star"><?xmltex \currentcnt{16}?><label>Figure 16</label><caption><p id="d1e4893">Histograms of the STEC residuals <bold>(a)</bold> and absolute residuals
<bold>(b)</bold> during the perturbed period for GRACE.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f16.png"/>

        </fig>

      <p id="d1e4908">Again, the NeQuick model seems to underestimate the measured STEC during
both periods for GRACE and Swarm A satellites. Compared to the NeQuick
model, during both periods the methods of SMART<inline-formula><mml:math id="M198" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> and exponential decay
decrease the residuals and the absolute residuals between measured and
estimated STEC for both GRACE and Swarm A satellites. The method rotation
with exponential decay performs, for both periods, very similarly to the NeQuick model. The performance of the method rotation is partly even worse than the one of the background model. Our impression is that the number and the distribution of the assimilated measurements is too small and the angle too limited to be sufficient to dispense with a background model, as is the case with the rotation method, which uses the model only for the estimation of the systematic error.</p>
      <p id="d1e4918">Regarding the STEC of Swarm A, the lowest residuals and the most reduction,
in comparison to the NeQuick model, are achieved by SMART<inline-formula><mml:math id="M199" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>. The median and
the SD of the SMART<inline-formula><mml:math id="M200" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> residuals are <inline-formula><mml:math id="M201" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.3 and <inline-formula><mml:math id="M202" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3.4 TECU
respectively for the quiet period and <inline-formula><mml:math id="M203" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.7 and <inline-formula><mml:math id="M204" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7 TECU for the perturbed period. Compared to the NeQuick model, the absolute median value is reduced by up to 64 % by SMART<inline-formula><mml:math id="M205" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> during the quiet period and by up to 61 % during the perturbed period. The SD value is decreased by up to 47 % during the quiet period and up to 29 % during the storm period. The second lowest residuals are achieved by the exponential decay; here, the median of the residuals is around 0.2 TECU for the quiet period and around 0.8 TECU for the perturbed period.</p>
      <p id="d1e4971">Regarding the STEC of GRACE during the quiet period, the lowest residuals
and the most reduction in comparison to the background, are achieved by the
exponential decay, followed by SMART<inline-formula><mml:math id="M206" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>. Exponential decay reduces<?pagebreak page1183?> the
background absolute median value by up to 26 % and the SD value by up to
28 %. The median of the residuals is around 0.2 TECU. For SMART<inline-formula><mml:math id="M207" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>, the
median of the residuals is around 2.9 TECU. During the perturbed period,
SMART<inline-formula><mml:math id="M208" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> reduces the absolute median, at most, by 17 % and the SD by 9 %. The exponential decay does not reduce the absolute median, compared to NeQuick, but it reduces the absolute SD value by 23 %. The median of the residuals is around <inline-formula><mml:math id="M209" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5 TECU for exponential decay and around 0.8 TECU for SMART<inline-formula><mml:math id="M210" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>.</p>
      <p id="d1e5009">Comparing the quiet and storm conditions, in general an increase in the RMS
and SD of the Swarm A residuals is observable for the NeQuick model and all
tomography methods regarding both satellites. This is not the case for the
GRACE residuals.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>Validation with independent LP in situ electron densities</title>
      <p id="d1e5020">In this section, we further extend our analyses to the validation of the
methods with independent LP in situ electron densities of the three Swarm
satellites. According to the locations of the LP measurements, the estimated
electron density values are interpolated (by a 3D interpolation, using the
MATLAB built-in function of scatteredInterpolant.m) from the 3D electron density reconstructions. For each satellite, the measured electron density
<inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is compared to the estimated one <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>. In
particular, we calculate the residuals <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:mi>e</mml:mi><mml:mo>=</mml:mo><mml:mi>N</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mi>N</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mi mathvariant="normal">est</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, the absolute
residuals <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:mfenced close="|" open="|"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, the relative residuals
<inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:mi>e</mml:mi></mml:mrow><mml:mrow><mml:mi>N</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mi mathvariant="normal">meas</mml:mi></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> and the absolute
relative residuals <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e5154">Figure 17 depicts the distribution of the residuals d<inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:math></inline-formula> for the quiet period along with the median, SD and RMS values, with Fig. 17a, b and c each presenting one of the Swarm satellites. In Fig. 18, the histograms of <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:mi>e</mml:mi><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> are given for the same period. In Fig. 18 we do not separate the values for the different satellites because these are similar. Figures 19 and 20 show the corresponding histograms for the perturbed period.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F17" specific-use="star"><?xmltex \currentcnt{17}?><label>Figure 17</label><caption><p id="d1e5204">Validation with LP data. Distribution of Swarm A, B and C
(separated) electron density residuals for the quiet period.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f17.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F18" specific-use="star"><?xmltex \currentcnt{18}?><label>Figure 18</label><caption><p id="d1e5216">Validation with LP data. Distribution of the Swarm absolute and
absolute relative electron density residuals for the quiet period.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f18.png"/>

        </fig>

      <?pagebreak page1184?><p id="d1e5225">The electron densities of the NeQuick model are, in median, slightly higher
than the LP in situ measurements for all three satellites during both
periods. The median and SD values for the <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula>
residuals produced by NeQuick are <inline-formula><mml:math id="M221" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 33 % and <inline-formula><mml:math id="M222" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 38 % respectively during the quiet period. For the perturbed period, we observe higher median and SD values of <inline-formula><mml:math id="M223" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 45 % and <inline-formula><mml:math id="M224" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 56 % respectively. The increase in the RMS and SD values of the absolute residuals is also visible for all the considered reconstruction methods.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F19" specific-use="star"><?xmltex \currentcnt{19}?><label>Figure 19</label><caption><p id="d1e5277">Validation with LP data. Distribution of the Swarm A, B and C
(separated) electron density residuals for the perturbed period.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f19.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F20" specific-use="star"><?xmltex \currentcnt{20}?><label>Figure 20</label><caption><p id="d1e5288">Validation with LP data. Distribution of the Swarm absolute and
absolute relative electron density residuals for the perturbed period.</p></caption>
          <?xmltex \igopts{width=503.61378pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1171/2020/angeo-38-1171-2020-f20.png"/>

        </fig>

      <p id="d1e5297">The methods of SMART<inline-formula><mml:math id="M225" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> and rotation with exponential decay follow the trend of the model and show similar distributions in Figs. 17 and  19. Comparing these two methods with the NeQuick model, the performance of SMART<inline-formula><mml:math id="M226" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> is slightly better, reducing the median of the absolute and absolute relative residuals by up to 8 %. Furthermore, during both periods, SMART<inline-formula><mml:math id="M227" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> reduces the SD values of the <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:mi>e</mml:mi><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> values by up to 23 %. However, the SD and RMS values of the <inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> residuals for SMART<inline-formula><mml:math id="M230" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> during the quiet period are higher than those of the NeQuick model. The median and SD values of the <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> residuals for SMART<inline-formula><mml:math id="M232" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> are <inline-formula><mml:math id="M233" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 % and <inline-formula><mml:math id="M234" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 43 % respectively during the quiet period and higher
during perturbed period, namely <inline-formula><mml:math id="M235" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 43 % and <inline-formula><mml:math id="M236" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 53 % respectively. The statistics of the methods exponential decay and rotation
are worse than those of NeQuick.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Summary and conclusions</title>
      <p id="d1e5428">In this paper, we assess three different propagation methods for an ensemble
Kalman filter approach in the case that a physical propagation model is not
available or is discarded due to the computational burden. We validate these
methods with independent STEC observations of the satellites of GRACE and Swarm A and with independent Langmuir probes data of the three Swarm satellites. The methods are compared to the algebraic reconstruction method SMART<inline-formula><mml:math id="M237" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>, which serves as a benchmark, and to the background model NeQuick for periods of the year 2015 covering quiet to perturbed ionospheric conditions.</p>
      <p id="d1e5438">Overlooking all the validation results, the methods of SMART<inline-formula><mml:math id="M238" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> and exponential decay reveal the best performance with the lowest residuals, whereas the method rotation with exponential decay provides only a small improvement compared to the NeQuick model. While SMART<inline-formula><mml:math id="M239" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> modifies the electron densities of the background model around the measurement geometry and produces rather small patches, the EnKF produces larger and smoother
patterns. As expected, the validations indicate that the electron<?pagebreak page1185?> density
estimates of the EnKF are not only dependent on the current measurement
geometry but also on prior assimilations.</p>
      <p id="d1e5455">The plausibility check in Sect. 4.2 shows that all methods successfully reduce the STEC residuals and provide better results than the background model. SMART<inline-formula><mml:math id="M240" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> demonstrates the best performance, and lowers the error statistics of the NeQuick model by up to 86 %, followed
by the method rotation, which decreases the median of the residuals by up to
83 %. The method exponential decay reduces the median by up to 55 %, but the SD values stay almost on the same level as for the NeQuick model.</p>
      <?pagebreak page1186?><p id="d1e5465">Although the EnKF with the method rotation reproduces the assimilated STEC
data well, less accurate estimates are obtained in the validation with
independent data. We assume that this has two main reasons. First, as the only propagation method, rotation is not anchored by the background model.
Second, the number of the assimilated measurements is low compared to the
number of unknowns, and the available measurements are unevenly distributed
and angle limited. Both together could lead to increased deviations in the
estimates of the truth.</p>
      <?pagebreak page1187?><p id="d1e5469">The methods SMART<inline-formula><mml:math id="M241" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> and the EnKF with exponential decay provide the best
estimates of the independent STEC and reduce the STEC residuals by up to
64 % for Swarm A and 28 % for GRACE, compared to the NeQuick model.
SMART<inline-formula><mml:math id="M242" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> generates the smallest residuals for the STEC measurements of Swarm
A, and exponential decay performs the best for STEC measurements of GRACE.</p>
      <p id="d1e5486">Concerning the estimation of independent electron densities of the Langmuir
probes, SMART<inline-formula><mml:math id="M243" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> shows the best results, reducing the absolute residuals by
up to 23 %. The median and SD values of the absolute residuals <inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>N</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">rel</mml:mi></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> for SMART<inline-formula><mml:math id="M245" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> are <inline-formula><mml:math id="M246" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 % and <inline-formula><mml:math id="M247" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 43 % respectively during quiet ionospheric conditions and <inline-formula><mml:math id="M248" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 43 % and <inline-formula><mml:math id="M249" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 53 % respectively during perturbed ionospheric conditions. The distributions of the residuals produced by rotation with exponential decay are similar to the ones of the NeQuick model. In general, all the considered methods generate relatively high residuals. These observations could be explained by the fact that the independent electron density measurements are located at the lower edge of the reconstructed area, and all the assimilated measurements are located above. Additionally, Swarm LPs were found to underestimate the true electron density systematically (see Sect. 3.3.2). In order to obtain better results for the lower altitudes, it might, therefore, be necessary to apply a kind of anchor point for the lower altitudes within the reconstruction procedure which could, for instance, be the Swarm LPs electron density measurements themselves.</p>
      <p id="d1e5551">Another approach for improving the reconstructions could be to precondition the background model, for example, in terms of F2 layer characteristics or the plasmapause location (see, for example, Bidaine and Warnant, 2010; Gerzen et al., 2017).</p>
      <p id="d1e5554">To obtain a comprehensive final impression of the performance of the
investigated methods and to gain insight into the ability of the methods to
correctly characterize the shapes of the electron density profiles, we
intend to continue the validation of the methods with additional, independent
measurements of the plasmasphere and topside ionosphere, for example, coherent scatter radar data.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e5561">The data that were used can be found in Sect. 3.3 or are available upon request.</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e5567">TG contributed the main ideas to the methods presented in this article, implemented the EKF, carried out the validation and wrote most of the sections. DM helped to fine-tune the propagation methods, took care of the operation of the background model and contributed sections to the final article. All co-authors helped to interpret the results, read and comment on the article.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e5573">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5579">We thank NOAA (<uri>ftp://ftp.ngdc.noaa.gov/STP/GEOMAGNETIC_DATA/INDICES/</uri>, last access: 2 November 2020) and the World Data Center Kyoto (<uri>http://wdc.kugi.kyoto-u.ac.jp/dstdir/index.html</uri>, last access: 2 November 2020) for
making the geo-related data, F10.7, Kp and DST indices available. We are
grateful to the European Space Agency for providing the Swarm data
(<uri>https://swarm-diss.eo.esa.int/</uri>, last access: 2 November 2020) and to the COSMIC Data
Analysis and Archive Center (CDAAC) for providing the STEC data of several LEO satellites (<uri>http://cdaac-www.cosmic.ucar.edu/cdaac/tar/rest.html</uri>, last access: 2 November 2020). Additionally, we express our gratitude to the Aeronomy and Radiopropagation Laboratory of the Abdus Salam International Centre for Theoretical Physics Trieste, Italy, for providing the NeQuick (version 2.0.2) for scientific purposes.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e5596">This study was performed as part of the MuSE project (grant no. 273481272) and funded by the DFG as a part of the Priority Programme of DynamicEarth (grant no. SPP-1788).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e5602">This paper was edited by Steve Milan and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>Analysis of different propagation models for the  estimation of the topside ionosphere and plasmasphere with an ensemble Kalman filter</article-title-html>
<abstract-html><p>The accuracy and availability of satellite-based applications, like Global Navigation Satellite System (GNSS) positioning and remote sensing, crucially depend on the knowledge of the ionospheric electron density distribution. The tomography of the ionosphere is one of the major tools for providing links to specific ionospheric corrections and studying and monitoring physical processes in the ionosphere and plasmasphere. In this work, we apply an ensemble Kalman filter (EnKF) approach for the 4D electron density reconstruction of the topside ionosphere and plasmasphere, with the focus on the investigation of different propagation models, and compare them with the iterative reconstruction technique of simultaneous multiplicative column normalized method plus (SMART+). The slant total electron content (STEC) measurements of 11 low earth orbit (LEO) satellites are assimilated into the reconstructions. We conduct a case study on a global grid with altitudes between 430 and 20&thinsp;200&thinsp;km, for two periods of the year 2015, covering quiet to perturbed ionospheric conditions. Particularly the performance of the methods for estimating independent STEC and electron density measurements from the three Swarm satellites is analysed. The results indicate that the methods of EnKF, with exponential decay as the propagation model, and SMART+ perform best, providing, in summary, the lowest residuals.</p></abstract-html>
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