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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ANGEO</journal-id><journal-title-group>
    <journal-title>Annales Geophysicae</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ANGEO</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Ann. Geophys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1432-0576</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/angeo-38-1063-2020</article-id><title-group><article-title>Simultaneous ground-based and in situ Swarm observations of equatorial F-region irregularities over Jicamarca</article-title><alt-title>Swarm observations of equatorial F-region irregularities over Jicamarca</alt-title>
      </title-group><?xmltex \runningtitle{Swarm observations of equatorial F-region irregularities over Jicamarca}?><?xmltex \runningauthor{S.~Aol et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Aol</surname><given-names>Sharon</given-names></name>
          <email>saol@must.ac.ug</email>
        <ext-link>https://orcid.org/0000-0002-7883-7500</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Buchert</surname><given-names>Stephan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2158-6074</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Jurua</surname><given-names>Edward</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Milla</surname><given-names>Marco</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9067-863X</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Mbarara University of Science and Technology, Department of Physics, Mbarara, Uganda</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Swedish Institute of Space Physics, Uppsala, Sweden</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Radio Observatorio de Jicamarca, Instituto Geofísico del Perú, Lima, Peru</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Sharon Aol (saol@must.ac.ug)</corresp></author-notes><pub-date><day>16</day><month>October</month><year>2020</year></pub-date>
      
      <volume>38</volume>
      <issue>5</issue>
      <fpage>1063</fpage><lpage>1080</lpage>
      <history>
        <date date-type="received"><day>8</day><month>November</month><year>2019</year></date>
           <date date-type="rev-request"><day>3</day><month>December</month><year>2019</year></date>
           <date date-type="rev-recd"><day>22</day><month>July</month><year>2020</year></date>
           <date date-type="accepted"><day>17</day><month>August</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2020 Sharon Aol et al.</copyright-statement>
        <copyright-year>2020</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020.html">This article is available from https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020.html</self-uri><self-uri xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020.pdf">The full text article is available as a PDF file from https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e121">Ionospheric irregularities are a common phenomenon in the low-latitude ionosphere. They can be seen in situ as depletions of plasma density, radar plasma plumes, or ionogram spread F by ionosondes. In this paper, we compared simultaneous observations of plasma plumes by the Jicamarca Unattended Long-term Investigations of the Ionosphere and Atmosphere (JULIA) radar, ionogram spread F generated from ionosonde observations installed at the Jicamarca Radio Observatory (JRO), and irregularities observed in situ by Swarm in order to determine whether Swarm in situ observations can be used as indicators of the presence of plasma plumes and spread F on the ground. The study covered the years from 2014 to 2018, as this was the period for which JULIA, Swarm, and ionosonde data sets were available. Overall, the results showed that Swarm's in situ density fluctuations on magnetic flux tubes passing over (or near) the JRO may be used as indicators of plasma plumes and spread F over (or near) the observatory. For Swarm and the ground-based observations, a classification procedure was conducted based on the presence or absence of ionospheric irregularities. There was a strong consensus between ground-based observations of ionospheric irregularities and Swarm's depth of disturbance of electron density for most passes. Cases, where ionospheric irregularities were observed on the ground with no apparent variation in the in situ electron density or vice versa, suggest that irregularities may either be localized horizontally or restricted to particular height intervals. The results also showed that the Swarm and ground-based observations of ionospheric irregularities had similar local time statistical trends with the highest occurrence obtained between 20:00 and 22:00 LT. Moreover, similar seasonal patterns of the occurrence of in situ and ground-based  ionospheric irregularities were observed with the highest percentage occurrence at the December solstice and the equinoxes and low occurrence at the June solstice. The observed seasonal pattern was explained in terms of the pre-reversal enhancement (PRE) of the vertical plasma drift. Initial findings from this research indicate that fluctuations in the in situ density observed meridionally along magnetic field lines passing through the JRO can be used as an indication of the existence of well-developed plasma plumes.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <?pagebreak page1064?><p id="d1e133">Generally, the ionosphere can be viewed as a layer with a relatively uniform plasma density distribution <xref ref-type="bibr" rid="bib1.bibx45" id="paren.1"/>. However, the night-time low-latitude ionosphere is characterized by localized plasma density structures, known as ionospheric irregularities <xref ref-type="bibr" rid="bib1.bibx63" id="paren.2"/>. The equatorial ionospheric irregularities may be identified as irregular plasma density “bite-outs” observed in situ along low Earth orbit (LEO) satellite tracks in the topside ionosphere <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx65 bib1.bibx66 bib1.bibx35" id="paren.3"/>. The equatorial ionospheric irregularities may also manifest as equatorial spread-F (ESF) signatures, which are irregular signatures on ionograms due to backscattering from the bottom side of the nighttime F-layer and also above <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx27" id="paren.4"/>. Ionospheric irregularities have also been called plasma plumes because of their appearance in range versus time radar displays <xref ref-type="bibr" rid="bib1.bibx71" id="paren.5"/>. The plumes are characterized by elongated, wedge-like cross sections that extend from the bottom of the F layer to higher altitudes <xref ref-type="bibr" rid="bib1.bibx65 bib1.bibx66 bib1.bibx43" id="paren.6"/>. Equatorial ionospheric irregularities usually extend along magnetic field lines to magnetic latitudes of about <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:msup><mml:mn mathvariant="normal">15</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:msup><mml:mn mathvariant="normal">20</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx37 bib1.bibx46 bib1.bibx35" id="paren.7"/>.</p>
      <p id="d1e184">Ionospheric irregularities in the low latitudes arise after sunset due to the Rayleigh–Taylor instability (RTI) which originates from the lower F region <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx35 bib1.bibx56" id="paren.8"/>. These irregularities vary with respect to scale, from several centimetres to hundreds of kilometres <xref ref-type="bibr" rid="bib1.bibx42 bib1.bibx73 bib1.bibx54" id="paren.9"/>.  A width of about 100 km was observed for the depleted ESF bands using an all-sky airglow imager <xref ref-type="bibr" rid="bib1.bibx49" id="paren.10"/>. The occurrence of ionospheric irregularities varies according to local time, season, longitude, latitude, and solar and magnetic activity  <xref ref-type="bibr" rid="bib1.bibx38" id="paren.11"/>. Their occurrence is a subject of interest because of the effect they have on propagating radio signals. Their presence in the ionosphere may cause amplitude and phase scintillations of radio signals, thereby affecting many applications that rely on these signals <xref ref-type="bibr" rid="bib1.bibx74" id="paren.12"/>.</p>
      <p id="d1e202">Equatorial ionospheric irregularities have been observed many times using ground-based instruments, such as incoherent and coherent scatter radars, ionosonde, and airglow cameras, and space-based instruments, such as rockets and LEO satellites <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx29 bib1.bibx46 bib1.bibx19 bib1.bibx11 bib1.bibx62 bib1.bibx70 bib1.bibx22 bib1.bibx2" id="paren.13"><named-content content-type="pre">e.g.</named-content></xref>. It should be noted that although ionospheric irregularities have been studied extensively, uncertainties still exist in understanding their evolution because of their varying scale with respect to size <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx62 bib1.bibx2" id="paren.14"/>. In this regard, different instruments are limited to observing ionospheric irregularities of specific sizes <xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx2" id="paren.15"/>. Therefore, coordinated observation of ionospheric irregularities using different instruments is an effective way to generate an integrated and comprehensive image for specifying ionospheric irregularities of different sizes <xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx16 bib1.bibx1 bib1.bibx2" id="paren.16"><named-content content-type="pre">e.g.</named-content></xref>. Specifically, the Jicamarca Radio Observatory (JRO) has provided a rare opportunity to observe ionospheric irregularities using multiple ground-based instruments due to its strategic location (12.0<inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, 76.8<inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W; magnetic latitude 0.6<inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S) at the magnetic equator. Many studies have reported the connection between scintillation-producing ionospheric irregularities observed by JULIA and equatorial plasma bubbles (EPBs) observed in situ over Jicamarca <xref ref-type="bibr" rid="bib1.bibx44 bib1.bibx8 bib1.bibx28 bib1.bibx11 bib1.bibx36 bib1.bibx58 bib1.bibx55 bib1.bibx47" id="paren.17"><named-content content-type="pre">e.g.</named-content></xref>. However, the relationship between metre-scale irregularities detected by coherent scatter radars and the underlying state parameters of the ionospheric plasma is not yet well understood <xref ref-type="bibr" rid="bib1.bibx30" id="paren.18"/>. Previous studies <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx58 bib1.bibx30 bib1.bibx55 bib1.bibx47" id="paren.19"><named-content content-type="pre">e.g.</named-content></xref> have mostly compared zonally oriented in situ plasma density measurements from the Communication Navigation Outage Forecasting System (C/NOFS) satellite with JULIA observations. The European Space Agency's Swarm satellites neatly revisit the JRO in orbits oriented in the meridional direction, providing a renewed opportunity to study in situ ionospheric irregularities recorded by Swarm in the meridional direction in comparison with observations from Jicamarca.</p>
      <p id="d1e262">A quantitative statistical relationship between plasma bubbles observed in situ in the meridional direction, 250 MHz amplitude scintillation, and  JULIA observations was reported by <xref ref-type="bibr" rid="bib1.bibx11" id="text.20"/> using data recorded by the polar-orbiting Defense Meteorological Satellite Program (DMSP). From the observations made by <xref ref-type="bibr" rid="bib1.bibx12" id="text.21"/>, the plasma plumes recorded by JULIA frequently occurred at altitudes lower than that of the DMSP orbit. Most of the plasma plumes failed to reach altitudes <inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">600</mml:mn></mml:mrow></mml:math></inline-formula> km and, therefore, were not observed by DMSP satellites that orbited at an altitude of about 840 km. It is possible to compare in situ measurements made by Swarm and JULIA observations at altitudes of 460 km (Swarm A and C) and 510 km (Swarm B). In contrast to DMSP, Swarm allows a comparison of measurements from identical instruments at different altitudes and in different longitudinal sectors <xref ref-type="bibr" rid="bib1.bibx75" id="paren.22"/>. Previous comparison of Swarm in situ measurements with ground-based radar observations <xref ref-type="bibr" rid="bib1.bibx75" id="paren.23"><named-content content-type="pre">e.g.</named-content></xref> mostly used Langmuir Probe (LP) measurements at a 2 Hz frequency. The faceplate carried by Swarm as part of the electric
field instrument (EFI) has enabled the discovery of small-scale (down to 500 m length along the spacecraft track) ionospheric irregularities. Moreover, the previous comparison of Swarm in situ measurements with ground-based radar observations was mostly a single-case presentation. <xref ref-type="bibr" rid="bib1.bibx75" id="text.24"/> demonstrated that the gradual spatial separation between Swarm A, C, and B would decrease the likelihood that all three satellites could capture ionospheric irregularity signatures in the same localized region or near particular equipment installed on the ground, such as ionosonde and radars. Nevertheless, only one single case of comparison between Swarm and JULIA observation was provided by <xref ref-type="bibr" rid="bib1.bibx75" id="text.25"/>.</p>
      <p id="d1e297">In this paper, we quantitatively compared the in situ observations of ionospheric irregularities recorded by the Swarm satellites with ground-based measurements of plasma plumes made by the JULIA radar for the years from 2014 to 2018 in order to determine whether Swarm in situ observations can be used as indicators of the presence of plasma plumes and spread F on the ground. The comparison is complemented by ionosonde measurements of spread F over the JRO. <xref ref-type="bibr" rid="bib1.bibx9" id="text.26"/> observed echoes on ionograms from ionosonde observations and proposed that these<?pagebreak page1065?> echo signatures were originating from ionosphere disturbances. As far as we know, <xref ref-type="bibr" rid="bib1.bibx70" id="text.27"/> were among the first to make concurrent observations of strong range spread F and ionospheric irregularities measured in situ using the ROCSAT-1 satellite; they found that strong spread F were caused by the ionospheric irregularities. However, ROCSAT-1 orbited  at an altitude of about 600 km with a 35<inline-formula><mml:math id="M7" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>orbital inclination. Therefore, we also compared the JULIA and Swarm observations of ionospheric irregularities with spread-F signatures recorded by an ionosonde co-located with the JULIA radar. To understand the range of altitude above sea level where ionospheric irregularities occur and the effect that they have on ground observations, a comparison of in situ electron density variation with ground-based measurements over a long time period is essential.</p>
      <p id="d1e315">This paper is organized as follows: in Sect. <xref ref-type="sec" rid="Ch1.S2"/>, the data and methods used in this study are described; in Sect. <xref ref-type="sec" rid="Ch1.S3"/>, the results are presented and discussed; and the findings of this study are summarized in Sect. <xref ref-type="sec" rid="Ch1.S4"/>.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Data and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Data</title>
      <p id="d1e339">This section provides brief descriptions of the instruments and data sets used to examine the signatures of ionospheric irregularities in this research: we analysed data obtained from Swarm, the JULIA radar, and ionosonde.</p>
<sec id="Ch1.S2.SS1.SSS1">
  <label>2.1.1</label><title>Swarm measurements of electron density</title>
      <p id="d1e349">The Swarm mission consists of three polar-orbiting satellites – Swarm A, B, and C <xref ref-type="bibr" rid="bib1.bibx20" id="paren.28"/>. They were launched into near-polar orbits at an initial altitude of about 500 km on 22 November 2013 <xref ref-type="bibr" rid="bib1.bibx72 bib1.bibx68" id="paren.29"/>. Each satellite is equipped with an electric field instrument (EFI) that is mounted on the ram side of the spacecraft <xref ref-type="bibr" rid="bib1.bibx20 bib1.bibx39" id="paren.30"/>. The ion density <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is derived from the EFI faceplate current assuming that the current is carried by ions hitting the faceplate due to the orbital motion of the spacecraft <xref ref-type="bibr" rid="bib1.bibx10" id="paren.31"/>. However, due to quasi-neutrality, <inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> must be equal to the electron density <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. With the 16 Hz <inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> measurements, Swarm observes ionospheric irregularities with sizes of up to 500 m. <xref ref-type="bibr" rid="bib1.bibx20" id="text.32"/> and <xref ref-type="bibr" rid="bib1.bibx39" id="text.33"/> provide detailed information on Swarm and the onboard instruments. In this study, we used the 16 Hz <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> measurements to examine topside ionospheric irregularities. The faceplate <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> data are readily available at <uri>http://earth.esa.int/swarm</uri> (last access: 23 February 2020).</p>
</sec>
<sec id="Ch1.S2.SS1.SSS2">
  <label>2.1.2</label><title>The JULIA radar </title>
      <p id="d1e449">The JULIA radar is a PC-based system for data acquisition. JULIA uses low-power transmitters with a frequency of approximately 50 MHz and  Jicamarca's main antenna <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx28 bib1.bibx11" id="paren.34"/>. Its aim is to record ionospheric irregularities and neutral atmospheric waves at the equatorial region for long periods of time. The pulse width used in the JULIA experiments during the period of study was 25 <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>s, and the pulse repetition was 160 pulses per second. In addition, 248 range gates that were separated by 3.75 km were sampled – from 0 km to about 930 km – during the period of study. For the identification of 3 m scale ionospheric irregularities, the backscattered 50 MHz JULIA radar echo was used. The radar observations provide the signal-to-noise ratio (SNR), Doppler velocity, and spectral width as a function of height and time. Data collected by the JULIA radar are readily available at <uri>http://jro.igp.gob.pe/madrigal/</uri> (last access: 23 February 2020). The website provides JULIA data from 1996 to date. Our analysis was restricted to the years from 2014 to 2018, as this was the period for which JULIA, Swarm, and ionosonde data sets were available.</p>
</sec>
<sec id="Ch1.S2.SS1.SSS3">
  <label>2.1.3</label><title>The digital ionosonde</title>
      <p id="d1e474">The equatorial spread-F (ESF) signatures are often recorded by ionosondes installed at the JRO. The ionosonde at the JRO is a Digisonde DPS-4 <xref ref-type="bibr" rid="bib1.bibx53" id="paren.35"/> which records ionograms (altitude versus frequency plots) at 15 min intervals. The Automatic Real-Time Ionogram Scaler with True height (ARTIST) ionogram autoscaling tool, developed at University of Massachusetts Lowell Center for Atmospheric Research (UMLCAR), is used to scale the ionograms, and the outputs are plasma frequency
profiles versus altitude <xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx77" id="paren.36"/>. The equatorial spread-F signatures were analysed from the ionograms.  The ionosonde data are also available on the Madrigal website, and we used all of the Jicamarca ionograms for the years from 2014 to 2018.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Methods</title>
      <p id="d1e492">This section presents the analysis techniques used in this study to identify the observed ionospheric
irregularity signatures with Swarm, JULIA, and the ionosonde.</p>
<sec id="Ch1.S2.SS2.SSS1">
  <label>2.2.1</label><title>In situ ionospheric irregularity identification</title>
      <?pagebreak page1066?><p id="d1e502">To examine topside ionospheric irregularities, the 16 Hz <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> Swarm faceplate data were used.
We followed the same method as <xref ref-type="bibr" rid="bib1.bibx45" id="text.37"/>, <xref ref-type="bibr" rid="bib1.bibx25" id="text.38"/>, and <xref ref-type="bibr" rid="bib1.bibx6" id="text.39"/> to derive the absolute electron density perturbation along Swarm orbital tracks, but we focused mainly on small-scale equatorial plasma structures. We utilized a 2 s running mean filter to determine the mean <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The selected running mean is equivalent to a 15 km scale length, given Swarm's velocity of about 7.5 km s<inline-formula><mml:math id="M17" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The mean <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was subtracted from the original observations to get the residual, <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, in a similar fashion to <xref ref-type="bibr" rid="bib1.bibx45" id="text.40"/>, who obtained the residual using total electron content (TEC) data. The standard deviation of the residuals was then calculated at a running window of 2 s to represent the magnitude of the perturbation, std(<inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). There is no standard threshold definition of how large <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mtext>std</mml:mtext><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> must be to identify plasma irregularities <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx68" id="paren.41"/>. However, the period considered in this study was characterized by low solar activity, and the recorded ionospheric irregularities were very weak. Therefore, a threshold value of std<inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">10</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, similar to that adopted by <xref ref-type="bibr" rid="bib1.bibx25" id="text.42"/>, was selected to provide a reasonable irregularity event identification at the small scales and the relatively low Swarm altitudes during the study period.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <label>2.2.2</label><title>Ground-based ionospheric irregularity identification</title>
      <p id="d1e659">The JULIA system computes and stores measurements of the zeroth and first lags of the autocorrelation function (ACF) of the signals from two receivers connected to the eastern and western quarters of the main antenna <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx76" id="paren.43"/>. The total power, Doppler velocity at first moment, and Doppler spectral width of the scattering signals can be determined from these measurements <xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx27" id="paren.44"/>. Of particular interest was the SNR measurements derived by the JULIA system to check plasma plumes for a given evening. In addition, we also used the vertical plasma drift measurements made by the Jicamarca incoherent scatter radar (ISR) to examine the pre-reversal enhancement (PRE) drifts <xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx60" id="paren.45"/>. Field-aligned irregularities in the F region are often observed by the JULIA radar between 18:00 and 06:00 LT <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx60" id="paren.46"/>. Therefore, to compare the Swarm observations with the JULIA measurements, only swarm satellite passes for the time between 18:00 and 06:00 LT were considered.</p>
      <p id="d1e674">The comparison of JULIA and Swarm observations was supplemented with ionosonde measurements from the JRO. The ionosonde data analysis was carried out using the SAO Explorer software <xref ref-type="bibr" rid="bib1.bibx52" id="paren.47"/>. To display ionograms, both the raw and processed (SAO) data were loaded into SAO Explorer. In addition, the spread-F index QF, known as the mean spread of the diffusing F-layer trace, was obtained by the ARTIST directly from the ionograms using SAO Explorer <xref ref-type="bibr" rid="bib1.bibx21 bib1.bibx77" id="paren.48"/>, and this was also used in this study to analyse the spread-F signatures. The spread-F index QF is defined as the extent of the diffuse reflection in kilometres averaged over all frequencies where a diffuse
echo appeared. For simplicity, the virtual height is used at each frequency to determine the range extent of the reflection. The ARTIST software for data analysis is described by <xref ref-type="bibr" rid="bib1.bibx21" id="text.49"/>. Spread-F ionograms were similarly studied by <xref ref-type="bibr" rid="bib1.bibx4" id="text.50"/> using magnetically conjugate ionosondes in South America and by <xref ref-type="bibr" rid="bib1.bibx77" id="text.51"/> for ionosondes and scintillation receivers at Sanya.
In the following section, the results of this study are presented and discussed.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussions</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Observations of ionospheric irregularities</title>
      <p id="d1e709">Examples of equatorial ionospheric irregularity events observed by Swarm A and C on 9 March 2015 and Swarm B on 5 April 2015 are shown in Fig. <xref ref-type="fig" rid="Ch1.F1"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e716">Swarm faceplate <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> data of ionospheric irregularity events on 9 March and 5 April 2015.
The panels show <bold>(a)</bold> the <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> variation, <bold>(b)</bold> <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <bold>(c)</bold> std(<inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) as functions of QLat, longitude (Long), and local time (LT). The dashed vertical black line represents the approximate QLat of the JRO.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f01.png"/>

        </fig>

      <p id="d1e783">In Fig. <xref ref-type="fig" rid="Ch1.F1"/>a, Swarm A and C encountered ionospheric irregularities along their tracks, occurring between about <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>quasi-dipole latitude (QLat) <xref ref-type="bibr" rid="bib1.bibx40" id="paren.52"/>, while they orbited over the JRO on 9 March 2015. Moreover, Swarm B, which orbited at about 510 km altitude above sea level, recorded ionospheric irregularities on 5 April 2015, as seen from Fig. <xref ref-type="fig" rid="Ch1.F1"/>b. <xref ref-type="bibr" rid="bib1.bibx75" id="text.53"/> also observed large <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> depletions along Swarm passes using the 2 Hz <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> measurements made by the LP in comparison with JULIA radar observations. With the 16 Hz data, <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> depletions can also be observed at even smaller scales – down to 500 m <xref ref-type="bibr" rid="bib1.bibx6" id="paren.54"/>. Figure. <xref ref-type="fig" rid="Ch1.F1"/>b presents the <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> with the background variations subtracted. Figure <xref ref-type="fig" rid="Ch1.F1"/>c shows how well the quantified absolute density perturbation captured the small-scale ionospheric irregularities in the faceplate <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> measurements. Given the fact that the ionospheric irregularities were observed in situ at Swarm altitudes, this shows that these ionospheric irregularities were in the topside ionosphere. The observed ionospheric irregularities occurred post-sunset and were most likely due to the generalized RTI <xref ref-type="bibr" rid="bib1.bibx35" id="paren.55"/>.</p>
      <p id="d1e894">The coherent scatter radar observations of ionospheric plasma irregularities are often shown in range–time–intensity format in which the SNR is plotted against altitude (range) and time <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx27" id="paren.56"/>. The major categories of plasma plumes that have been observed by the JULIA radar are bottom-type, bottom-side, and topside <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx27" id="paren.57"><named-content content-type="pre">e.g.</named-content></xref>. Examples of these categories are presented in Fig. <xref ref-type="fig" rid="Ch1.F2"/>a–c, which show bottom-type, bottom-side, and topside structures respectively. In Fig. <xref ref-type="fig" rid="Ch1.F2"/>, the observed structures are generally visible post-sunset, and this coincides with the time when the generalized RTI is expected to intensify <xref ref-type="bibr" rid="bib1.bibx35" id="paren.58"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e914">Examples of the different types of ESFs that may be observed by the JULIA radar. The colour bar presents the signal-to-noise ratio (SNR) in decibels (dB).</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f02.png"/>

        </fig>

      <?pagebreak page1067?><p id="d1e923">In Fig. <xref ref-type="fig" rid="Ch1.F2"/>a, bottom-type structures are weak and narrow scattering layers, and their thickness is less than about 50 km. Bottom-type structures are too weak to induce prominent ionogram spread F or cause intense radio scintillation at very high frequency (VHF) frequencies and above <xref ref-type="bibr" rid="bib1.bibx26" id="paren.59"/>. Their disturbance in the ionosphere is also not sufficient to cause signatures on airglows <xref ref-type="bibr" rid="bib1.bibx26" id="paren.60"/>. Bottom-side structures correspond to broad, more structured, and stronger scattering layers at relatively higher altitudes that last for a few hours (as seen in Fig. <xref ref-type="fig" rid="Ch1.F2"/>b), whereas topside layers or radar plumes (seen in Fig. <xref ref-type="fig" rid="Ch1.F2"/>c) represent larger-scale elongated structures originating from bottom-side layers and extending to the topside ionosphere <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx26 bib1.bibx15 bib1.bibx14" id="paren.61"/>. They are indicators of strong plasma plumes <xref ref-type="bibr" rid="bib1.bibx60" id="paren.62"/>.</p>
      <p id="d1e945">To check the altitude coverage of the various types of plumes observed by the JULIA radar compared to the Swarm altitudes, a histogram of the percentage occurrence of maximum heights was generated for the different types of plumes. To determine the plume maximum height, SNR outliers were first eliminated to minimize spurious data points. The maximum height then corresponds to the maximum range in kilometres where the SNR was recorded.
Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the frequency of occurrence of the maximum height achieved by the various types of plumes for the years from 2014 to 2018.</p>
      <p id="d1e950">In Fig. <xref ref-type="fig" rid="Ch1.F3"/>, the Swarm altitude range coincides with a high frequency of occurrence of the maximum range of topside plasma plumes. This reveals that the Swarm orbits are most suitable to detect
topside plasma plumes compared with bottom-type and bottom-side plumes. The following subsection presents in situ observations of ionospheric irregularities by Swarm over or near the JRO longitude in comparison with the JULIA and ionosonde observations.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Coincident ground-based and swarm observations of ionospheric irregularities</title>
      <p id="d1e963">Here, in comparison with the ground-based observations, selected Swarm orbits that were directly overhead or passed close to the JRO are presented with observed plasma density structures. Figure <xref ref-type="fig" rid="Ch1.F4"/> shows example cases on 2 and 8 March 2015 where Swarm A and C passed directly over and near the JRO respectively.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e970">Frequency of occurrence of the maximum height achieved by the different types of ESFs observed by the JULIA radar for the years from 2014 to 2018. The grey region indicates the approximate altitude coverage of the Swarm satellites from 2014 to 2018.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f03.png"/>

        </fig>

      <?pagebreak page1068?><p id="d1e979">Column (i) of Fig. <xref ref-type="fig" rid="Ch1.F4"/> shows the range–time–intensity maps overlaid with Swarm A and C positions.
The JULIA radar started to detect weak 3 m irregularities from an altitude of about 300 km at approximately 19:30 LT on 2 and 8 March 2015. Gradually, the irregularities evolved into a series of spectacular plume structures that extended to altitudes of about 800 km. The plumes were only visible in the pre-midnight hours, and this corresponds to the time when the RTI dominates <xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx56" id="paren.63"/>.
The observed plasma plumes coincided with the Swarm passes.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e990">Examples of co-located observations by Swarm and the JULIA radar on 2  and 8 March 2015. The local time coverage and the corresponding altitude of Swarm while orbiting over or near the JRO are (black for Swarm A, and red for Swarm C) shaded yellow in column (i). The QLat of the JRO is indicated using a vertical dotted black line in column (ii). The ground tracks of Swarm and the location of the JRO are shown on the maps in column (iii). The thick black line in column (iii) shows the geomagnetic equator, and the dotted black lines show the EIA belts (<inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:msup><mml:mn mathvariant="normal">15</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> QLat).</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f04.png"/>

        </fig>

      <p id="d1e1012">Columns (ii) and (iii) in Fig. <xref ref-type="fig" rid="Ch1.F4"/> show that Swarm satellites encountered ionospheric irregularities along their tracks on 2 March 2015 . The irregularities were more intense near the equatorial ionization anomaly (EIA) belts at about <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M39" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>QLat than at the quasi-dipole equator. <xref ref-type="bibr" rid="bib1.bibx75" id="text.64"/> analysed one sample of plasma plumes recorded by JULIA; from the results they presented, several Global Positioning System (GPS) satellites orbiting over the JRO encountered irregularities near the magnetic equator on 2 March 2015. Therefore, the structures observed by Swarm could be associated with the JULIA plasma plumes on 2 March 2015. <xref ref-type="bibr" rid="bib1.bibx55" id="text.65"/> and <xref ref-type="bibr" rid="bib1.bibx47" id="text.66"/> also presented single-case events while comparing in situ plasma density measurements made by the C/NOFS satellite with JULIA observations. However, in the results presented by <xref ref-type="bibr" rid="bib1.bibx55" id="text.67"/> and <xref ref-type="bibr" rid="bib1.bibx47" id="text.68"/>, the EIA could not be resolved because C/NOFS orbited in a nearly meridional direction.</p>
      <p id="d1e1061">On 8 March 2015, Swarm A and C crossed the quasi-dipole equator in the evening sector at geographic longitudes of about 81.6 and 80.17<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W respectively. The <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> profiles of Swarm A and C in columns (ii) and (iii) of Fig. <xref ref-type="fig" rid="Ch1.F4"/> show depletions near the quasi-dipole equator. However, the longitudes of the Swarm satellites were offset from the JRO longitude to the west. <xref ref-type="bibr" rid="bib1.bibx11" id="text.69"/> made a similar observation, comparing DMSP plasma density measurements with JULIA observations. Ionospheric irregularities are generally assumed to drift westward across the magnetic field lines <xref ref-type="bibr" rid="bib1.bibx35" id="paren.70"/>. Therefore, the depletions met by Swarm A and C may not correspond to the plumes observed by the JULIA radar.  The ionospheric irregularities observed by Swarm on 8 March 2015 may correspond to the plume remnants that drifted across the radar beam.</p>
      <p id="d1e1092">We also checked on the spread-F signatures on ionosonde data from JRO in comparison with the results presented in Fig. <xref ref-type="fig" rid="Ch1.F4"/>. Figures <xref ref-type="fig" rid="Ch1.F5"/> and <xref ref-type="fig" rid="Ch1.F6"/> show ionograms produced on 2 and 8 March 2015 using the SAO explorer respectively. The ionosonde measurements were recorded at 15 min intervals.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e1103">Ionograms showing the occurrence of ESF on 2 March 2015 between 00:15 and 03:45 UT. The local
time zone of these events was UT-5.</p></caption>
          <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f05.png"/>

        </fig>

      <p id="d1e1113">The sequence of ionograms presented in Fig. <xref ref-type="fig" rid="Ch1.F5"/> shows that spread-F signatures were continuously observed from 00:30 to 05:00 UT (19:30 to 24:00 LT), while Swarm encountered ionospheric irregularities on 2 March 2015 between about 20:27 and 21:05 LT (see Fig. <xref ref-type="fig" rid="Ch1.F4"/>).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e1122">Ionograms showing the occurrence of ESF on 8 March 2015 between 00:15 and 03:45 UT. The local
time zone of these events was UT-5.</p></caption>
          <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f06.png"/>

        </fig>

      <p id="d1e1131">The ionograms on 8 March 2015 also showed strong spread-F signatures starting at 00:15 UT (19:15 LT) and this coincided with the time period when ionospheric irregularities and plasma plumes were recorded by Swarm and JULIA respectively.
The results presented in Figs. <xref ref-type="fig" rid="Ch1.F4"/>, <xref ref-type="fig" rid="Ch1.F5"/>, and <xref ref-type="fig" rid="Ch1.F6"/> show that the in situ ionospheric irregularities, spread-F signatures, and plumes were observed over and near the JRO simultaneously. Strong range spread F is caused by ionospheric irregularities and can, therefore, be regarded as a result of the generalized RTI mechanism <xref ref-type="bibr" rid="bib1.bibx51 bib1.bibx69 bib1.bibx57 bib1.bibx5" id="paren.71"/>. The spread-F signatures are triggered by irregularities at the bottom or within a growing plasma bubble or by declining bubbles <xref ref-type="bibr" rid="bib1.bibx4" id="paren.72"/>. Figures <xref ref-type="fig" rid="Ch1.F4"/>, <xref ref-type="fig" rid="Ch1.F5"/>, and <xref ref-type="fig" rid="Ch1.F6"/> provide evidence that JULIA, Swarm, and the ionosonde simultaneously observed ionospheric irregularities over the JRO. In the next section, we present the results of a statistical analysis of Swarm, JULIA, and ionosonde observations.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Statistical analysis of occurrence of ionospheric irregularities</title>
      <p id="d1e1161">The formation of equatorial ionospheric irregularities is influenced by several factors including local time, season, and magnetic latitude and longitude. The data sets accumulated for the years from 2014 to 2018 were sufficient to compare the dependence of ground-based and in situ occurrence of ionospheric irregularities on various factors. Here, we present the results of the statistical analyses carried out in this study. The specific details of each statistical result are described in the following subsections.</p>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>Statistics of occurrence of ionospheric irregularities by category</title>
      <p id="d1e1171">The Swarm satellites regress in longitude by about 22.5<inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> between orbital ascending nodes. Therefore, in comparison with JULIA and ionosonde data, the Swarm passes were allowed to be within <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M44" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> magnetic longitude of the JRO to make sure that a sufficient amount of Swarm passes could be used for the statistical examination. Both JULIA and ionosonde data during the time when Swarm was within a <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> longitudinal range of the longitude of the ground site were selected. Summary plots, such as those presented in Fig. 4, were generated for all days during the years from<?pagebreak page1069?> 2014 to 2018 for which the data were available. In total, 560 night-time orbits were used for which JULIA, Swarm, and ionosonde data were concurrently available. The outputs of the summary plots could be categorized into four cases considering the presence (or absence) of irregularities. In general, these four cases are as follows: irregularities observed both on the ground and in situ, no irregularities observed on the ground or in situ, irregularities observed only in situ, and irregularities observed only on the ground. For each range–time–intensity plot, the SNR corresponding to the peak height was determined and an event was identified as a significant irregularity when the peak height was <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">400</mml:mn></mml:mrow></mml:math></inline-formula> km. For a peak height less than 400 km, the events were classified as weak irregularities or were not considered to be irregularities. It is important to note that a peak height less than 400 km is a representation of bottom-type, bottom-side, and no equatorial spread-F signatures; therefore, all spread-F altitudes were taken into consideration during the analysis. For the in situ Swarm observations, we considered a threshold of <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">10</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for std(<inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) as a significant irregularity event, whereas std(<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) values less than the threshold were not considered to be irregularities. For the ionosonde measurements, QF values greater than or equal to 20 km were considered to be significant irregularity events. For each category, the percentage occurrence was computed as a ratio of the total number of events in that category to the number of observations. These cases are presented in Fig. <xref ref-type="fig" rid="Ch1.F7"/>a for Swarm and JULIA and in Fig. <xref ref-type="fig" rid="Ch1.F7"/>b for Swarm and ionosonde.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e1289">Percentage occurrence of irregularities in each category observed by <bold>(a)</bold> the Swarm satellites and JULIA observations and <bold>(b)</bold> the Swarm satellites and ionosonde observations for the years from 2014 to 2018.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f07.png"/>

          </fig>

      <?pagebreak page1072?><p id="d1e1304">Ionospheric irregularities were detected by Swarm and JULIA in about 55.08 % of the cases for Swarm A, 56.89 % of the cases for Swarm C, and 58.62 % of the cases for Swarm B (as seen from Fig. <xref ref-type="fig" rid="Ch1.F7"/>a). No ionospheric irregularities were detected by the Swarm satellites and JULIA in about 27.12 % of the cases for Swarm A, 25.0 % of the cases for Swarm C, and 21.55 % of the cases for Swarm B. In Fig. <xref ref-type="fig" rid="Ch1.F7"/>b, a high percentage occurrence was also observed when there was agreement (irregularities observed by both ionosonde and Swarm and no irregularities observed by the ionosonde and Swarm) between Swarm and ionosonde. The two categories where there was an agreement in Fig. <xref ref-type="fig" rid="Ch1.F7"/>a and b indicate that Swarm satellites, JULIA, and the ionosonde simultaneously observed ionospheric irregularities.
<xref ref-type="bibr" rid="bib1.bibx11" id="text.73"/> also examined the relationship between measurements from JULIA and a DMSP satellite during 110 nights for the years from 1998 to 1999. In comparison with the statistical results presented in Fig. 7 for Swarm and JULIA, the DMSP satellite sampled very few EPBs compared with plumes detected by the JULIA radar. According to <xref ref-type="bibr" rid="bib1.bibx11" id="text.74"/>, there was a low probability that JULIA and the DMSP satellite would encounter ionospheric irregularities because most plumes could not ascend to altitudes greater than 600 km.
There were also some disagreements between the ground-based and space-based observations: JULIA and the ionosonde detected plume structures, whereas Swarm registered no events (as seen from the statistical results in Fig. <xref ref-type="fig" rid="Ch1.F7"/>a and b). For these cases, the Swarm altitudes during the pass were examined. It was observed that the plume structures did not ascended to Swarm altitudes by the time the satellites passed over Jicamarca or that the satellites were simply in a different location. For instances when Swarm registered events while JULIA and ionosonde recorded no signatures, we checked on the longitudinal separation between the satellite passes and the ground site. The longitudinal separations obtained between the Swarm passes and the ground site were often <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:msup><mml:mn mathvariant="normal">5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, and the magnitude of the in situ perturbations were relatively low. Ionospheric irregularities tend to be magnetic field aligned <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx37 bib1.bibx46 bib1.bibx35" id="paren.75"/>; therefore, Swarm may encounter irregularities of relatively small magnitudes in situ, while JULIA and ionosonde do not identify any events, for a wider longitudinal offset of a pass from the ground site.</p>
      <p id="d1e1339"><xref ref-type="bibr" rid="bib1.bibx75" id="text.76"/> showed two cases of Swarm passes over JULIA: one case where Swarm A encountered ionospheric irregularities and JULIA recorded spread F and another case where Swarm B never registered an ionospheric irregularity and JULIA never recorded a spread F. The statistical results shown in Fig. <xref ref-type="fig" rid="Ch1.F7"/> assert that Swarm B can also detect irregularities and plasma bubbles associated with plumes and spread F, although with more mismatches than for Swarm A and C. Swarm B recorded more mismatches than Swarm A and C due to the progressive temporal and altitudinal separation between Swarm B and Swarm A and C <xref ref-type="bibr" rid="bib1.bibx75" id="paren.77"/>. Swarm B orbits at a higher altitude than Swarm A and C, and it crosses the same region later than Swarm A and C. Generally, a difference in the percentage occurrence in all categories is observed between Swarm A and C (Fig. <xref ref-type="fig" rid="Ch1.F7"/>), although they orbit at the same altitude above sea level. The large-scale longitudinal bubble structure is sometimes observed with the Swarm A and C satellites <xref ref-type="bibr" rid="bib1.bibx72" id="paren.78"/>; however, for small-scale irregularities, the 1.5<inline-formula><mml:math id="M53" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>  longitudinal separation between the satellites is too large for a significant correlation between them.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>Local time and seasonal variation of ionospheric irregularities</title>
      <p id="d1e1371">Numerous studies have shown that ionospheric irregularities at low latitudes are a post-sunset phenomenon owing to the electrodynamics launched after sunset <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx42 bib1.bibx4" id="paren.79"><named-content content-type="pre">e.g.</named-content></xref>. Here, we also compared the local time dependence of the occurrence of plasma plumes observed by the JULIA radar, spread F recorded by the ionosonde, and small-scale ionospheric irregularities encountered by Swarm for different seasons.
Figure <xref ref-type="fig" rid="Ch1.F8"/> shows the percentage occurrence of plasma plumes as a function of local time and height grouped into different seasons: December  solstice, June solstice, March equinox, and September equinox.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e1383">Percentage occurrence of plasma plumes as a function of local time and height for the years 2014–2018. Each panel represents a season. The number indicated in brackets is a count of days used to generate each season's statistics when measurements were made. The dotted white vertical line represents midnight.</p></caption>
            <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f08.png"/>

          </fig>

      <p id="d1e1392">To obtain the results presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/>, ground-based JULIA SNR data for the years from 2014 to 2018 were used. To eliminate the impact of geomagnetically disturbed conditions on the statistical outcomes, the data were filtered<?pagebreak page1073?> and only those recorded during quiet geomagnetic conditions (Kp <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>) were taken into account. The JULIA data accumulated for the years from 2014 to 2018 were sufficient for examining the seasonal variation. Therefore, the seasonal dependence of the local time distribution of JULIA observations of ionospheric irregularities was also examined by grouping all of the data into different seasons corresponding to the March equinox (February–March–April), the June solstice (May–June–July), the September equinox (August–September–October), and the December solstice (November–December–January). For each local time–height bin, the percentage occurrence was obtained by dividing the number of observations with <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mtext>SNR</mml:mtext><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> dB by the total number of observations <xref ref-type="bibr" rid="bib1.bibx60" id="paren.80"><named-content content-type="pre">e.g.</named-content></xref>.</p>
      <p id="d1e1425">It is visible from Fig. <xref ref-type="fig" rid="Ch1.F8"/> that the plasma plumes only occurred at night. Figure <xref ref-type="fig" rid="Ch1.F8"/> shows the occurrence of irregularities in plasma plumes starting at about 19:00 LT that generally last past midnight. This observation is similar to those of previous studies <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx28 bib1.bibx60" id="paren.81"><named-content content-type="pre">e.g.</named-content></xref>. The observed plasma plumes are connected with the non-linear development of the RTI, which is initiated at the bottom of the F region <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx24" id="paren.82"/>. The highest percentage occurrence takes place at the December solstice and the equinoxes. The lowest percentage occurrence is observed at the June solstice. The daily variations in the vertical plasma drift measured by the ISR were used to better understand the seasonal patterns observed in Fig. <xref ref-type="fig" rid="Ch1.F8"/>. Figure <xref ref-type="fig" rid="Ch1.F9"/> presents the local time variation of the F-region vertical drift velocity for the years from 2014 to 2018.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e1447">Local time variation of F-region vertical plasma drifts as a function of local time. The red curves represent the averaged vertical drift curves. Each panel represents a season.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f09.png"/>

          </fig>

      <p id="d1e1456">From Fig. <xref ref-type="fig" rid="Ch1.F9"/>, the PRE of the vertical plasma drifts can be seen around the sunset hours (between 17:00 and 20:00 LT) before its reversal. Figure <xref ref-type="fig" rid="Ch1.F9"/> shows the highest PRE peak during the December solstice and equinox seasons, whereas the PRE peak is the lowest at the June solstice. Similar observations were made by <xref ref-type="bibr" rid="bib1.bibx60" id="text.83"/>. Comparing the results presented in Fig. <xref ref-type="fig" rid="Ch1.F9"/> with the local time distributions presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/>, it follows that a high occurrence of post-sunset topside spread F is associated with enhancements of the PRE peak. A high PRE implies significant <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">B</mml:mi></mml:mrow></mml:math></inline-formula> vertical drifts that boost the rate of RTI growth <xref ref-type="bibr" rid="bib1.bibx64 bib1.bibx19" id="paren.84"/>. The PRE moves the ionospheric F layer to higher altitudes where there is less interaction between ions and neutrals. The decreased interaction between ions and neutrals leads to increased RTI  <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx35" id="paren.85"/>.</p>
      <?pagebreak page1074?><p id="d1e1489">Figure <xref ref-type="fig" rid="Ch1.F8"/> also shows a relatively high occurrence of irregularities after midnight, especially at the solstices and the September equinox. Similar  observations were made by <xref ref-type="bibr" rid="bib1.bibx28" id="text.86"/> and <xref ref-type="bibr" rid="bib1.bibx60" id="text.87"/>. The extension of the occurrence of plumes post-midnight may be due to the late reversal time and small post-reversal electric fields <xref ref-type="bibr" rid="bib1.bibx28" id="paren.88"/>. Despite the use of low-power transmitters, the JULIA radar can also detect weak post-midnight irregularities, particularly during the solstice seasons (as shown in Fig. <xref ref-type="fig" rid="Ch1.F8"/>). However, the detected post-midnight ionospheric irregularities often exist at much lower altitudes than those presented by <xref ref-type="bibr" rid="bib1.bibx60" id="text.89"/>. Using Jicamarca radar measurements, <xref ref-type="bibr" rid="bib1.bibx19" id="text.90"/>  reported that the ionospheric irregularities that occur after midnight are typically well-formed structures that can be connected to the disturbed dynamo.</p>
      <p id="d1e1512">Figure <xref ref-type="fig" rid="Ch1.F10"/> shows the QF indices derived from ionosonde observations as a function of local time and month. To obtain the results presented in Fig. 10, ground-based ionosonde data for the years from 2014 to 2018 were used. These data were also filtered, and only those recorded during quiet geomagnetic conditions (Kp <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>) were considered.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e1530">Month and local time (LT) variations of QF indices observed over the JRO for the years from 2014 to 2018. The white spaces show periods when no spread F was detected. The dotted black vertical line represents midnight.</p></caption>
            <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f10.png"/>

          </fig>

      <p id="d1e1539">Considering that equatorial ionospheric irregularities are night-time phenomena, we only present QF data from 18:00 to 06:00 LT in Fig. <xref ref-type="fig" rid="Ch1.F10"/>. To generate Fig. <xref ref-type="fig" rid="Ch1.F10"/>, the QF data were averaged over 0.1 h local time bins for each month (<inline-formula><mml:math id="M58" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis). Figure <xref ref-type="fig" rid="Ch1.F10"/> shows that the QF index was high in the post-sunset period with peak values occurring between about 20:00 and 00:00 LT at the December solstice and the equinoxes. The high QF values at the equinoxes and the December solstice are most likely due to the RTI, which is usually triggered at the bottom side of a rising equatorial F layer. The rate of growth of the RTI depends on the meridional wind and the eastward electric field PRE determined by the<?pagebreak page1075?> longitudinal gradient of the flux-tube-integrated conductivity <xref ref-type="bibr" rid="bib1.bibx64 bib1.bibx7" id="paren.91"/>. At the June solstice, the QF values were small after sunset, as seen in Fig. <xref ref-type="fig" rid="Ch1.F10"/>. Generally, Fig. <xref ref-type="fig" rid="Ch1.F10"/> shows moderate QF values lasting until local midnight or longer (similar to the trend presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/>). The low post-sunset QF values at the June solstice can be attributed to the small PRE, which can also be seen in Fig. <xref ref-type="fig" rid="Ch1.F9"/>c.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e1569">Quasi-dipole latitude and local time distributions of std(<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for Swarm A, C, and B for the years from 2014 to 2018. The dotted white vertical line represents midnight, and the dotted red horizontal line represents the quasi-dipole latitude of Jicamarca (<inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:mn mathvariant="normal">0.6</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>). The white spaces represent data gaps.</p></caption>
            <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f11.png"/>

          </fig>

      <p id="d1e1608">Figure <xref ref-type="fig" rid="Ch1.F11"/> shows the QLat–LT distributions of std<inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for the Swarm satellites for the years from 2014 to 2018. Recall that the Swarm passes were allowed to be within <inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:msup><mml:mn mathvariant="normal">5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> magnetic longitude. The <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> data collected for the 5 years were also grouped into different seasons similar to those presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/>. The results presented in Fig. <xref ref-type="fig" rid="Ch1.F11"/> were also generated considering only the geomagnetically quiet conditions (Kp <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>).  The std(<inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) was then calculated in bins of <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> h resolution in QLat and local time. The occurrence rate of ionospheric irregularities does not always correspond to the highest amplitude of ionospheric irregularities <xref ref-type="bibr" rid="bib1.bibx68" id="paren.92"/>. Therefore, we presented the calculated std(<inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) per bin as a function of QLat and local time, as seen in Fig. <xref ref-type="fig" rid="Ch1.F11"/>. From Fig. <xref ref-type="fig" rid="Ch1.F11"/>, high std(<inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) values frequently occurred between about <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:msup><mml:mn mathvariant="normal">20</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> QLat, i.e. at the approximate location of the EIA belts. The distribution of the std(<inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), as seen in Fig. <xref ref-type="fig" rid="Ch1.F11"/>, is essentially symmetrical about the quasi-dipole equator. The symmetrical distribution about the magnetic equator has also been observed in earlier studies <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx13 bib1.bibx68" id="paren.93"><named-content content-type="pre">e.g.</named-content></xref>; this confirms that equatorial ionospheric irregularities usually extend along the magnetic field lines in the northern and southern directions, and they are concentrated at the EIA belts <xref ref-type="bibr" rid="bib1.bibx35" id="paren.94"/>. The std(<inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) attained a maximum between 20:00 and 22:00 LT. A decrease was detected after 22:00 until 06:00 LT. The local time distribution of std(<inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) for Swarm A, B, and C is the same as that of the quiet-time F-region echoes presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/> and the QF distribution presented in Fig. <xref ref-type="fig" rid="Ch1.F10"/>. The distribution of std(<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) shown in Fig. <xref ref-type="fig" rid="Ch1.F11"/> has peak values at local times and QLat ranges where the RTI is expected. In terms of seasons, as observed from Fig. <xref ref-type="fig" rid="Ch1.F11"/>, high values of std(<inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) were seen at the equinoxes and the December solstice, whereas the lowest values were detected at the June solstice. This is similar to the seasonal dependence of quiet-time F-region echoes presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/>.
In Fig. <xref ref-type="fig" rid="Ch1.F11"/>, Swarm hardly encountered post-midnight irregularities while orbiting over South America during all seasons. In Fig. <xref ref-type="fig" rid="Ch1.F8"/>, it is observed that the post-midnight plumes often existed at lower altitudes at the solstices and the September equinox. Therefore, the low post-midnight ionospheric irregularity observations by Swarm may be because the plumes failed to reach Swarm altitudes.</p>
      <p id="d1e1846">For comparison, Fig. <xref ref-type="fig" rid="Ch1.F12"/> shows the quasi-dipole versus local time distribution of ionospheric irregularities based on the Swarm Ionospheric Bubble Index (IBI), which is a standard Level 2 product of the Swarm mission <xref ref-type="bibr" rid="bib1.bibx50" id="paren.95"/>. The IBI provides information on the climatology of ionospheric irregularities and the level of magnetic field disturbance by taking both the electron density and magnetic field measurements into account <xref ref-type="bibr" rid="bib1.bibx50 bib1.bibx68" id="paren.96"/>. It is important to note that the IBI is has a value of 1, 0, or <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> for bubble detected, not detected, or undetermined respectively. Therefore, to generate the results in Fig. <xref ref-type="fig" rid="Ch1.F12"/>, the data sets were first grouped into different seasons corresponding to the March equinox, the June solstice, the September equinox, and the December solstice. For each season, the data were then binned into <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> h quasi-dipole latitude–local time bins. For each quasi-dipole latitude–local time bin, the percentage occurrence was obtained by dividing the number of observations with an IBI of 1 by the total number of observations.
The binned percentage occurrence of an IBI of 1 shown in Fig. 12 has similar seasonal characteristics as the in situ irregularities shown in Fig. 11. The percentage occurrence of an IBI of 1 ranges from 0 % to 20 % which is relatively low. The low percentage occurrence of ionospheric irregularities derived from the IBI was also observed by <xref ref-type="bibr" rid="bib1.bibx68" id="text.97"/>. This may be because the magnitude of ionospheric irregularities must be large enough to cause magnetic field fluctuations <xref ref-type="bibr" rid="bib1.bibx68" id="paren.98"/>. The latitudinal profile of std(<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and the percentage occurrence of an IBI of 1 have peaks near the anomaly crests (about <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:msup><mml:mn mathvariant="normal">15</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> QLat). The diamagnetic effect in fluctuations of <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are believed to be the cause of an IBI of 1, and this occurs at the anomaly crests <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx41" id="paren.99"/>.</p>

      <fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><label>Figure 12</label><caption><p id="d1e1934">Quasi-dipole latitude and local time distributions of the IBI for Swarm A, C, and B for the years from 2014 to 2018. The dotted white vertical line represents midnight, and the dotted red horizontal line represents the quasi-dipole latitude of Jicamarca (<inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:mn mathvariant="normal">0.6</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>). The white spaces represent data gaps.</p></caption>
            <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/38/1063/2020/angeo-38-1063-2020-f12.png"/>

          </fig>

      <p id="d1e1958">The Bragg condition for the JULIA radar implies that the coherent spread echoes are from density variations at about a 3 m wavelength <xref ref-type="bibr" rid="bib1.bibx35" id="paren.100"/>. The Bragg condition for backscatter means that a radar can only observe structures in the refractive index with a size close to the half radar wavelength <xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx23" id="paren.101"/>. The Swarm electron density measurements used in this study are limited by a sampling rate of 16 Hz and an orbital velocity of about 7.5 km s<inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to wavelengths of about 500 m and longer respectively. The good correlation between the Swarm measurements at these wavelengths and the spread echoes from Swarm altitudes suggest that the irregularities seen by Swarm occur over a spectrum of different wavelengths, at least from about 500 m down to the radar wavelength of 3 m. A non-linear decay of unstable waves could explain this.  In addition, we expect that the radar signal could be affected by scintillations which are particularly known from one-way signal propagation such as in Global Navigation Satellite System (GNSS) and VHF satellite beacons <xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx78" id="paren.102"/>. For the radar, this could be relevant for echoes where the Bragg reflection occurs at high altitudes, above Swarm. Fresnel theory shows that wavelengths at the Fresnel scale of  <inline-formula><mml:math id="M83" display="inline"><mml:msqrt><mml:mrow><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>d</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msqrt></mml:math></inline-formula> are most relevant for causing scintillations. Here, <inline-formula><mml:math id="M84" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is the wavelength (3 m for the JULIA radar), and <inline-formula><mml:math id="M85" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> is the distance from the perturbation to the receiver (445–510 km for Swarm). This gives a Fresnel scale between about 1.6 and 1.7 km. The Swarm measurements generally indicate that irregularities at such scales are present near the paths<?pagebreak page1076?> of Bragg-reflected radar signals. Therefore, we suggest that spread-F signals may, at times, be a result of both the Bragg backscattering at the highest altitude and scintillations of the radio waves to and from the scatter region.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions</title>
      <p id="d1e2024">In this paper, the results of a study of equatorial ionospheric irregularities detected by the JULIA radar and ionosonde in comparison with in situ <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> measurements made by Swarm for the years from 2014 to 2018 was presented. Cases of coincidence between Swarm, JULIA, and ionosonde observations were discussed. Moreover, the JULIA, ionosonde, and Swarm observations were examined statistically during geomagnetically quiet conditions. The local time and seasonal statistical patterns obtained from JULIA, the ionosonde, and Swarm were explained using drift measurements by the ISR.</p>
      <p id="d1e2038">Results based on the JULIA radar and the ionosonde agreed with the plasma density obtained from measurements of the Swarm faceplate for single satellite passes over or near the JRO. Based on an on–off classification, in the majority of cases, when the JULIA radar detected topside plasma plumes, Swarm also observed plasma bubbles when its trajectory crossed directly overhead or near the JRO. This was also true for the ionosonde measurements. A few exceptions were also observed when the JULIA radar and the ionosonde detected the presence of plasma structures, whereas Swarm did not record any bubbles and vice versa. For the case when JULIA and the ionosonde recorded irregularity signatures whereas Swarm observed no structures, the plume structures may not have ascended to Swarm altitudes by the time the satellites passed over Jicamarca or the satellites may simply have been in a different location. Swarm was able to detect ionospheric irregularities in situ, whereas no signature was recorded on the ground simply because the irregularities occurred at magnetic longitudes that were largely offset from the longitude of the ground site. Statistical differences between Swarm A and C were observed, and these were attributed to the 1.5<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> longitudinal separation between them which becomes significant for small-scale irregularities.</p>
      <p id="d1e2050">The three phenomena, namely plasma plumes observed by the JULIA radar, spread-F signatures recorded by the ionosonde, and small-scale irregularities detected by Swarm, revealed similarities in the patterns of occurrence based on the local time and different seasons. The highest occurrence rate was observed at the December solstice and at the equinoxes, whereas a low occurrence rate was observed at the June solstice. Measurements of the vertical plasma drift, made by the ISR, were used to understand the seasonal<?pagebreak page1077?> dependence of the occurrence of topside spread F and in situ density irregularities. The seasonal dependence of the occurrence of topside spread F and in situ <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> irregularities can be explained by the extent to which plasma is drifted vertically upwards.</p>
      <p id="d1e2064">The 5 year Swarm faceplate <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> data set has revealed a lot of detailed features regarding the electron density variations associated
with plasma bubbles. In situ measurements of <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> by Swarm are a promising tool to indicate the likelihood of plasma plumes and spread-F occurrence at times and locations where radar or ionosonde measurements are not available. The geometry, however, is an important factor; therefore, when determining whether satellite observations are valid or accurate for any given ground site, algorithms should take the position of the satellite and the apex height of the magnetic field lines into account.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e2094">The official Swarm website is <uri>http://earth.esa.int/swarm</uri> (last access: 30 September 2020, <xref ref-type="bibr" rid="bib1.bibx17" id="altparen.103"/>), and <uri>ftp://swarm-diss.eo.esa.int</uri> (last access: 30 September 2020, <xref ref-type="bibr" rid="bib1.bibx31" id="altparen.104"/>) is the server for the distribution of Swarm data.
The IBI measurements used in this study can be obtained from
<uri>https://swarm-diss.eo.esa.int/#swarm%2FLevel2daily%2FLatest_baselines%2FIBI</uri> (last access: 30 September 2020, <xref ref-type="bibr" rid="bib1.bibx32" id="altparen.105"/>). The radar measurements used in this study can be obtained from the Madrigal database at <uri>http://jro.igp.gob.pe/madrigal/</uri> (last access: 30 September 2020, <xref ref-type="bibr" rid="bib1.bibx34" id="altparen.106"/>). The Kp index values used in this study were obtained from  <uri>http://omniweb.gsfc.nasa.gov/</uri> (last access: 30 September 2020, <xref ref-type="bibr" rid="bib1.bibx61" id="altparen.107"/>). The SAO Explorer software was obtained from <uri>http://ulcar.uml.edu/SAO-X/SAO-X.html</uri> (last access: 30 September 2020, <xref ref-type="bibr" rid="bib1.bibx67" id="altparen.108"/>).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e2138">The ideas presented in this paper were designed and implemented by AS, SB, EJ, and MM. AS prepared the paper with contributions from all the co-authors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e2144">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><?pagebreak page1078?><p id="d1e2150">This study was financially supported by the International Science Programme (ISP) of the Uppsala University, Sweden, and by the Jicamarca International Research Experience Program (JIREP, <uri>http://www.igp.gob.pe/convocatorias/jirep</uri>) of the Instituto Geofísico del Perú with support from the US National Science Foundation (NSF). The authors acknowledge the
European Space Agency's Swarm team for the Swarm mission. We also acknowledge the anonymous referees for their insightful comments which significantly improved the quality of this paper.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e2158">This research has been supported by the International Science Programme of the Uppsala University, Sweden (grant no. UGA 02) and the Jicamarca International Research Experience Program (NSF grant no. AGS-1732209).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e2164">This paper was edited by Keisuke Hosokawa and reviewed by two anonymous referees.</p>
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    <!--<article-title-html>Simultaneous ground-based and in situ Swarm observations of equatorial F-region irregularities over Jicamarca</article-title-html>
<abstract-html><p>Ionospheric irregularities are a common phenomenon in the low-latitude ionosphere. They can be seen in situ as depletions of plasma density, radar plasma plumes, or ionogram spread F by ionosondes. In this paper, we compared simultaneous observations of plasma plumes by the Jicamarca Unattended Long-term Investigations of the Ionosphere and Atmosphere (JULIA) radar, ionogram spread F generated from ionosonde observations installed at the Jicamarca Radio Observatory (JRO), and irregularities observed in situ by Swarm in order to determine whether Swarm in situ observations can be used as indicators of the presence of plasma plumes and spread F on the ground. The study covered the years from 2014 to 2018, as this was the period for which JULIA, Swarm, and ionosonde data sets were available. Overall, the results showed that Swarm's in situ density fluctuations on magnetic flux tubes passing over (or near) the JRO may be used as indicators of plasma plumes and spread F over (or near) the observatory. For Swarm and the ground-based observations, a classification procedure was conducted based on the presence or absence of ionospheric irregularities. There was a strong consensus between ground-based observations of ionospheric irregularities and Swarm's depth of disturbance of electron density for most passes. Cases, where ionospheric irregularities were observed on the ground with no apparent variation in the in situ electron density or vice versa, suggest that irregularities may either be localized horizontally or restricted to particular height intervals. The results also showed that the Swarm and ground-based observations of ionospheric irregularities had similar local time statistical trends with the highest occurrence obtained between 20:00 and 22:00&thinsp;LT. Moreover, similar seasonal patterns of the occurrence of in situ and ground-based  ionospheric irregularities were observed with the highest percentage occurrence at the December solstice and the equinoxes and low occurrence at the June solstice. The observed seasonal pattern was explained in terms of the pre-reversal enhancement (PRE) of the vertical plasma drift. Initial findings from this research indicate that fluctuations in the in situ density observed meridionally along magnetic field lines passing through the JRO can be used as an indication of the existence of well-developed plasma plumes.</p></abstract-html>
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