<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ANGEO</journal-id><journal-title-group>
    <journal-title>Annales Geophysicae</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ANGEO</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Ann. Geophys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1432-0576</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/angeo-36-1117-2018</article-id><title-group><article-title>Data mining for vortices on the Earth's magnetosphere –<?xmltex \hack{\break}?> algorithm application for detection and analysis</article-title><alt-title>Data mining for vortices</alt-title>
      </title-group><?xmltex \runningtitle{Data mining for vortices}?><?xmltex \runningauthor{Y.~M.~Collado-Vega et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Collado-Vega</surname><given-names>Yaireska M.</given-names></name>
          <email>yaireska.m.colladovega@nasa.gov</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Kalb</surname><given-names>Virginia L.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Sibeck</surname><given-names>David G.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Hwang</surname><given-names>Kyoung-Joo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9583-8882</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Rastätter</surname><given-names>Lutz</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>NASA Goddard Space Flight Center,  Space Weather Laboratory, Code 674, Greenbelt, MD, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>NASA Goddard Space Flight Center,   Terrestrial Information Systems, Code 619, Greenbelt, MD, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Southwest Research Institute, San Antonio, TX, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Yaireska M. Collado-Vega (yaireska.m.colladovega@nasa.gov)</corresp></author-notes><pub-date><day>16</day><month>August</month><year>2018</year></pub-date>
      
      <volume>36</volume>
      <issue>4</issue>
      <fpage>1117</fpage><lpage>1129</lpage>
      <history>
        <date date-type="received"><day>4</day><month>December</month><year>2017</year></date>
           <date date-type="rev-recd"><day>11</day><month>June</month><year>2018</year></date>
           <date date-type="accepted"><day>13</day><month>June</month><year>2018</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2018 Yaireska M. Collado-Vega et al.</copyright-statement>
        <copyright-year>2018</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018.html">This article is available from https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018.html</self-uri><self-uri xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018.pdf">The full text article is available as a PDF file from https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018.pdf</self-uri>
      <abstract>
    <p id="d1e132">Unsteady processes in the solar wind–magnetosphere interaction,
such as vortices developed at the magnetopause boundary by the
Kelvin–Helmholtz instability, may contribute to the process of mass, momentum
and energy transfer into the Earth's magnetosphere. The research described in
this paper validates an algorithm to automatically detect and characterize
vortices based on velocity data from simulations. The vortex identification
algorithm (VIA) systematically searches the 3-D velocity fields to
identify critical points where the magnitude of the velocity vector vanishes.
The velocity gradient tensor is computed and its invariants are used to
assess vortex structure in the flow field. We use the Community Coordinated
Modeling Center (CCMC) Runs on Request capability to create a series of model
runs initialized from the conditions observed by the Cluster mission in the
<xref ref-type="bibr" rid="bib1.bibx10" id="text.1"/> analysis of Kelvin–Helmholtz vortices observed during
southward interplanetary magnetic field (IMF) conditions. We analyze further
the properties of the vortices found in the runs, including the velocity
changes within their motion across the magnetosheath. We also demonstrate the
potential of our tool to identify and characterize other transient features
(e.g., flux transfer events, FTEs) with vortical internal structures. We find
that the vortices are associated with flows on the magnetosheath side of the
magnetopause that reach speeds greater than the solar wind speed at the
bow shock.</p>
  </abstract>
      <kwd-group>
        <kwd>Magnetospheric physics (MHD waves and instabilities; solar wind–magnetosphere interactions) – space plasma physics (numerical simulation studies)</kwd>
      </kwd-group>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e145">Large eddy structures or vortices can mark regions of intense flow activity
and are important in understanding physical transport processes. Coherent
vortical structures are often the most important physical mechanisms for
generating and sustaining turbulent motion. One important mechanism of vortex
generation is the Kelvin–Helmholtz instability. When the different layers of
a stratified fluid are in relative motion, the shear causes a wrinkling of
their interface, which is amplified by nonlinearities to produce vortical
motion. Such a situation exists when the solar wind passes the Earth's
magnetopause. Finding and studying these vortices is important for
understanding the Sun–Earth connection. Even in the initial stages, these
vortices can transfer momentum, energy and mass from the solar wind to the
Earth's magnetosphere (<xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx18 bib1.bibx7" id="altparen.2"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p id="d1e153">Streamlines are mapped to show an example of the method used to
identify vortices in the data. If the norm of <bold>R</bold> is greater than
the norm of <bold>S</bold>, we consider this point to lie at the center of a
possible vortex. In <bold>(a)</bold> we have the case where
<inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">S</mml:mtext><mml:mo>|</mml:mo><mml:mo>&gt;</mml:mo><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">R</mml:mtext><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> and in <bold>(b)</bold> <inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">R</mml:mtext><mml:mo>|</mml:mo><mml:mo>&gt;</mml:mo><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">S</mml:mtext><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> where the location of a vortex is then considered.</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f01.pdf"/>

      </fig>

      <?pagebreak page1118?><p id="d1e215">Recently <xref ref-type="bibr" rid="bib1.bibx10" id="text.3"/> reported in situ observations of nonlinearly
developed Kelvin–Helmholtz vortices during southward interplanetary magnetic
field (IMF) conditions using Cluster data. The nonlinearity
can facilitate mass transfer by initiating reconnection within the vortices
(<xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx23 bib1.bibx17" id="altparen.4"/>). <xref ref-type="bibr" rid="bib1.bibx11" id="text.5"/> also described
the first in situ observations of Kelvin–Helmholtz waves at high latitudes
using Cluster data under dawnward IMF, which demonstrates another means by
which solar wind plasma can enter the magnetosphere. <xref ref-type="bibr" rid="bib1.bibx13" id="text.6"/> showed
that Kelvin–Helmholtz waves are much more ubiquitous than previously
thought, and they can occur under most solar wind and IMF conditions. These
cases also demonstrate that the KH instability appears under varying
orientations of the IMF, even though the past reports suggested KH events
occur preferentially during northward IMF
(<xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx4 bib1.bibx7" id="altparen.7"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e236">Figure from Hwang et al. (2011) where vortices were found using the
BATS-R-US simulation. The region of the dawnside flank magnetopause is blown
up (<inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:mo>≤</mml:mo><mml:mi>X</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:mo>≤</mml:mo><mml:mi>Y</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>≤</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>),
the current density is color-coded, and flow velocities are denoted by arrows
<bold>(a–e)</bold>. The grid in the <inline-formula><mml:math id="M5" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M6" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> plane used for the simulation is shown in
panel <bold>(f)</bold> where density is color-coded here.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f02.jpg"/>

      </fig>

      <p id="d1e322"><xref ref-type="bibr" rid="bib1.bibx2" id="text.8"/> used the results of a 3-D magnetohydrodynamics (MHD)
simulation driven by real solar wind conditions to investigate vortices
generated mostly under northward IMF. They presented statistics for a total
of 304 vortices found near the ecliptic plane on the magnetopause flanks.
Large-scale vortices of up to 10 <inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were found, with 273 of the
vortices generated under northward IMF, and 31 generated under southward IMF.
The vortices generated under northward IMF were more prevalent on the
dawnside than on the duskside and were substantially less ordered on the
dawnside than on the duskside. The investigation relied on a manual search of
the data, facilitated by the visualization tool MHD Explorer, implemented in
Interactive Data Language (IDL). Since then, we have developed methods to
automate this process by the use of data-mining techniques. A second study,
<xref ref-type="bibr" rid="bib1.bibx3" id="text.9"/>, used the first stages of the automated approach to analyze
vortex development when the IMF abruptly switched from southward to northward
with other solar wind conditions fixed. This was the first time that vortices
formed during high-latitude reconnection were visualized. Even though the
vortex detection algorithm was successfully implemented, the visualization
code was embedded in another software tool maintained by others, and both
were dependent on the IDL platform proprietary software. As such, the code
was not available for experimentation and development, nor easily shared. We
are now using a “C” language implementation of the algorithm as well as a
stand-alone visualization code and have made steps in the direction of an
open software tool. We have also made improvements to the algorithm based
upon the results of the current work. This
work also extends previous analyses by including the visualization of the
magnetic field.</p>
      <p id="d1e341">The vortices found in the second study were not linked to specific observed
vortices in satellite data. The present paper goes a step further, and it
validates the algorithm by a direct comparison of VIA-found vortices with
independently vetted vortices. Using the CCMC's Runs on Request capability,
we used the model runs initialized from the same conditions observed by the
Cluster mission in the <xref ref-type="bibr" rid="bib1.bibx10" id="text.10"/> analysis of Kelvin Helmholtz vortices
observed during southward IMF. We wanted to have an initial platform where we
could cross-check our findings with vortices already observed at the
magnetosphere. The fast data characterization and vortex detection made
possible with this algorithm will permit the researcher to identify
magnetosphere locations for further investigation in large simulation output
data sets. This not only saves time, but also diminishes the potential for
missing features of interest.</p>
      <p id="d1e347">Taking advantage of this capability, we analyze further the properties of the
identified vortices, including speed and extent. We also analyze the velocity
changes within their motion across the magnetosheath, and we establish the
potential of our tool to characterize other transient features that have
vortical internal structures like some flux transfer events (FTEs). Section 2
describes the methodology and how the algorithm works. Section 3 describes
the data analysis of the features found and the comparison with those from
<xref ref-type="bibr" rid="bib1.bibx10" id="text.11"/>. Section 4 further analyzes the vortices structures, and
Sect. 5 includes a summary and concluding remarks.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e355">Solar wind conditions used for the MHD simulation used by
<xref ref-type="bibr" rid="bib1.bibx10" id="text.12"/>. It shows the ion density, temperature, <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
        <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f03.png"/>

      </fig>

</sec>
<?pagebreak page1119?><sec id="Ch1.S2">
  <title>Methodology</title>
      <p id="d1e434">In this paper, we focus our attention on the simulation run employed by
<xref ref-type="bibr" rid="bib1.bibx10" id="text.13"/> to study Kelvin Helmholtz vortices during southward IMF. We
acquired the 3-dimensional BATS-R-US model
(<xref ref-type="bibr" rid="bib1.bibx20 bib1.bibx5 bib1.bibx24" id="altparen.14"/>) runs from the CCMC database (cdf
files), interpolated to a uniform grid with custom Python code using CCMC's
Kameleon library, and extracted the velocity components to ingest into the
custom analytics for vortex identification in our VIA. The code has runtime
options for a search region bounding box, and a preferential vorticity
direction. We limited the region to that referenced in Hwang's study (<inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mi>X</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mi>Y</mml:mi><mml:mo>&lt;</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), and
vorticity axis within 45<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> of
the <inline-formula><mml:math id="M17" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> axis. The algorithm then computes the velocity gradient tensor for
each point in the flow field, <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:math></inline-formula>, which can be written as the sum of
a symmetric part <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mtext mathvariant="bold">S</mml:mtext><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>(</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
and an antisymmetric part <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mtext mathvariant="bold">R</mml:mtext><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>(</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. <bold>S</bold> corresponds to the
strain field in the three dimensions of its eigenvectors. <bold>R</bold>
corresponds to the rotation. If the norm of <bold>R</bold> is greater than the
norm of <bold>S</bold>, we consider this point to lie at the center of a
possible vortex, since the rotational strength magnitude exceeds the shear
strain rate (<xref ref-type="bibr" rid="bib1.bibx9" id="altparen.15"/>).</p>
      <p id="d1e612">For these points, we transform the velocity field to a coordinate system with
<inline-formula><mml:math id="M21" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> axis defined by the vorticity vector at that point
(<inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:math></inline-formula>). The velocity field is then projected onto the new
<inline-formula><mml:math id="M23" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M24" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> plane where local streamlines are computed. A point is a possible
vortex if its neighborhood exhibits both closed streamlines and a velocity
magnitude minimum at the projected point. Figure <xref ref-type="fig" rid="Ch1.F1"/> show the
streamlines computed for a data set where <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">S</mml:mtext><mml:mo>|</mml:mo><mml:mo>&gt;</mml:mo><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">R</mml:mtext><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> and
where <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">R</mml:mtext><mml:mo>|</mml:mo><mml:mo>&gt;</mml:mo><mml:mo>|</mml:mo><mml:mtext mathvariant="bold">S</mml:mtext><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula>, respectively. A major update to the
algorithm is the addition of the Lambda 2 criterion, a Galilean invariant
method that can adequately identify vortices from a 3-D velocity field
(<xref ref-type="bibr" rid="bib1.bibx12" id="altparen.16"/>), and it is useful to fine-tune the vortex<?pagebreak page1120?> classification.
This new addition has been shown to help identify false positives, which is a
capability that we did not have before. This method requires that at least
2 eigenvalues of <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msup><mml:mtext mathvariant="bold">S</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mtext mathvariant="bold">R</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> are negative. This
algorithm is successful at finding the vortex center, but it is not immune to
false hits. We can try to screen for these false hits by grouping the
vortices into classes by spatial proximity. The class size can be used as a
filter to eliminate isolated points that are more likely to be numerical
artifacts. The vortex algorithm provides the location from which to begin, so
the locations of interest are identified faster, and they can be visualized
using any available and compatible tool.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e715">Properties of the vortices found with our algorithm separated into
time step, cluster size, transformed coordinate system, vortex coordinates,
vorticity vector and <inline-formula><mml:math id="M28" display="inline"><mml:mi>Q</mml:mi></mml:math></inline-formula> value.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Time step</oasis:entry>
         <oasis:entry colname="col2">Cluster size</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M29" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M30" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M31" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M32" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M33" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M34" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Vorticity vector</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M35" display="inline"><mml:mi>Q</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">12200</oasis:entry>
         <oasis:entry colname="col2">5</oasis:entry>
         <oasis:entry colname="col3">(74,  56,  37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M36" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>6.75, <inline-formula><mml:math id="M37" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M38" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.05, <inline-formula><mml:math id="M39" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.22, <inline-formula><mml:math id="M40" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.97)</oasis:entry>
         <oasis:entry colname="col6">110 935</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">5</oasis:entry>
         <oasis:entry colname="col3">(75, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M41" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>6.50, <inline-formula><mml:math id="M42" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M43" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M44" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.01, <inline-formula><mml:math id="M45" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.34, <inline-formula><mml:math id="M46" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.94)</oasis:entry>
         <oasis:entry colname="col6">212 385</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">10</oasis:entry>
         <oasis:entry colname="col3">(86, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M47" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>3.75, <inline-formula><mml:math id="M48" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M49" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M50" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.07, 0.02, <inline-formula><mml:math id="M51" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">148 530</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">10</oasis:entry>
         <oasis:entry colname="col3">(87, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M52" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>3.50, <inline-formula><mml:math id="M53" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M54" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M55" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.07, 0.02, <inline-formula><mml:math id="M56" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">130 175</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">12215</oasis:entry>
         <oasis:entry colname="col2">4</oasis:entry>
         <oasis:entry colname="col3">(73, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M57" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>7.00, <inline-formula><mml:math id="M58" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M59" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.00, <inline-formula><mml:math id="M60" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.26, <inline-formula><mml:math id="M61" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.96)</oasis:entry>
         <oasis:entry colname="col6">150 039</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">23</oasis:entry>
         <oasis:entry colname="col3">(83, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M62" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>4.50, <inline-formula><mml:math id="M63" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M64" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M65" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.01, 0.02, <inline-formula><mml:math id="M66" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">205 282</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">23</oasis:entry>
         <oasis:entry colname="col3">(84, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M67" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>4.25, <inline-formula><mml:math id="M68" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M69" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M70" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.01, 0.03, <inline-formula><mml:math id="M71" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">171 959</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">2</oasis:entry>
         <oasis:entry colname="col3">(97, 58, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M72" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>1.00, <inline-formula><mml:math id="M73" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.75, <inline-formula><mml:math id="M74" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M75" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.02, 0.02, <inline-formula><mml:math id="M76" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">20 041</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">12230</oasis:entry>
         <oasis:entry colname="col2">30</oasis:entry>
         <oasis:entry colname="col3">(80, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M77" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>5.25, <inline-formula><mml:math id="M78" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M79" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.02, <inline-formula><mml:math id="M80" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.02, <inline-formula><mml:math id="M81" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">254 208</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">30</oasis:entry>
         <oasis:entry colname="col3">(81, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M82" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>5.00, <inline-formula><mml:math id="M83" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M84" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.02, <inline-formula><mml:math id="M85" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.02, <inline-formula><mml:math id="M86" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">249 727</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">9</oasis:entry>
         <oasis:entry colname="col3">(93, 57, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M87" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>2.00, <inline-formula><mml:math id="M88" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.00, <inline-formula><mml:math id="M89" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.00, 0.02, <inline-formula><mml:math id="M90" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">24 788</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">9</oasis:entry>
         <oasis:entry colname="col3">(94, 57, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M91" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>1.75, <inline-formula><mml:math id="M92" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.00, <inline-formula><mml:math id="M93" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M94" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.07, 0.01, <inline-formula><mml:math id="M95" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">32 826</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">12245</oasis:entry>
         <oasis:entry colname="col2">25</oasis:entry>
         <oasis:entry colname="col3">(79, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M96" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>5.50, <inline-formula><mml:math id="M97" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M98" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M99" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.00, <inline-formula><mml:math id="M100" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.05, <inline-formula><mml:math id="M101" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">257 976</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">4</oasis:entry>
         <oasis:entry colname="col3">(89, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M102" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>3.00, <inline-formula><mml:math id="M103" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M104" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M105" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.04, 0.01, <inline-formula><mml:math id="M106" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">39 254</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">4</oasis:entry>
         <oasis:entry colname="col3">(101, 59, 37)</oasis:entry>
         <oasis:entry colname="col4">(0.00, <inline-formula><mml:math id="M107" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.50, <inline-formula><mml:math id="M108" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M109" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.02, 0.06, <inline-formula><mml:math id="M110" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">13 545</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">12300</oasis:entry>
         <oasis:entry colname="col2">26</oasis:entry>
         <oasis:entry colname="col3">(78, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M111" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>5.75, <inline-formula><mml:math id="M112" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M113" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.00, <inline-formula><mml:math id="M114" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.05, <inline-formula><mml:math id="M115" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">221 142</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">8</oasis:entry>
         <oasis:entry colname="col3">(88, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M116" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>3.25, <inline-formula><mml:math id="M117" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M118" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M119" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.03, 0.01, <inline-formula><mml:math id="M120" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">44 247</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">8</oasis:entry>
         <oasis:entry colname="col3">(89, 56, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M121" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>3.00, <inline-formula><mml:math id="M122" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.25, <inline-formula><mml:math id="M123" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M124" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.07, 0.00, <inline-formula><mml:math id="M125" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">32 653</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">2</oasis:entry>
         <oasis:entry colname="col3">(66, 57, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M126" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>8.75, <inline-formula><mml:math id="M127" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.00, <inline-formula><mml:math id="M128" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.02, <inline-formula><mml:math id="M129" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.15, <inline-formula><mml:math id="M130" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.99)</oasis:entry>
         <oasis:entry colname="col6">80 514</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">4</oasis:entry>
         <oasis:entry colname="col3">(62, 58, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M131" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>9.75, <inline-formula><mml:math id="M132" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.75, <inline-formula><mml:math id="M133" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M134" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.09, <inline-formula><mml:math id="M135" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.20, <inline-formula><mml:math id="M136" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.97)</oasis:entry>
         <oasis:entry colname="col6">18 026</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">3</oasis:entry>
         <oasis:entry colname="col3">(100, 59, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M137" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>0.25, <inline-formula><mml:math id="M138" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.50, <inline-formula><mml:math id="M139" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.07, 0.09, <inline-formula><mml:math id="M140" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.99)</oasis:entry>
         <oasis:entry colname="col6">36 391</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">12315</oasis:entry>
         <oasis:entry colname="col2">4</oasis:entry>
         <oasis:entry colname="col3">(93, 57, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M141" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>2.00, <inline-formula><mml:math id="M142" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.00, <inline-formula><mml:math id="M143" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.01, 0.03, <inline-formula><mml:math id="M144" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">5398</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">4</oasis:entry>
         <oasis:entry colname="col3">(94, 57, 37)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M145" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>1.75, <inline-formula><mml:math id="M146" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.00, <inline-formula><mml:math id="M147" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1)</oasis:entry>
         <oasis:entry colname="col5">(0.03, 0.07, <inline-formula><mml:math id="M148" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.00)</oasis:entry>
         <oasis:entry colname="col6">29 977</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<sec id="Ch1.S2.SS1">
  <title>Analysis</title>
      <p id="d1e2102">We used MHD model runs available at the CCMC website, specifically the run
for 28 July 2006 used by <xref ref-type="bibr" rid="bib1.bibx10" id="text.17"/>. This is a BATS-R-US model run with
a very high spatial resolution of 0.125 Earth Radii on the dayside (subsolar)
region and the flank
magnetopause. Figure <xref ref-type="fig" rid="Ch1.F2"/> shows the MHD simulation results using the
BATS-R-US code presented in <xref ref-type="bibr" rid="bib1.bibx10" id="text.18"/>. The figure shows the dawnside
region of the magnetosphere (<inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mi>X</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mi>Y</mml:mi><mml:mo>&lt;</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and how the instability grows from the
first panel (a) to the last one (e). Panel (f) shows the grid on the <inline-formula><mml:math id="M151" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M152" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula>
plane used for the simulation. The colors represent the<?pagebreak page1121?> current density,
except in panel (f) where it represents the density, and the arrows represent
the flow direction. Some vortices can be seen starting to develop in diagram
(a) around <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10.8</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">11</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e2264">The white dots mark where the vortex centers were found using our
VIA and they are visualized using Mathematica software for the same
time steps as shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. The colors represent velocity
magnitude and the arrows indicate the flow direction.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f04.png"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e2277">3-D representation of the vorticity vectors from the structure found
on the <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> cut plane around <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6.75</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10.75</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (shown at the left). The tool can give more
information on the extent of the vorticity vectors (shown in black screwlike
symbols – center) and where they are located in the magnetosphere domain,
with the <inline-formula><mml:math id="M160" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M161" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M162" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> axes represented in red, green and blue colors,
respectively (shown at the right).</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f05.jpg"/>

        </fig>

      <p id="d1e2359">For several boundary crossing observations by Cluster, <xref ref-type="bibr" rid="bib1.bibx10" id="text.19"/> tested
the Kelvin–Helmholtz instability criteria for incompressible plasma
conditions (<xref ref-type="bibr" rid="bib1.bibx6" id="altparen.20"/>) using the plasma and field parameters
(Eq. <xref ref-type="disp-formula" rid="Ch1.E1"/>). In this equation, <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msub><mml:mi>v</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> represent flow velocity,
<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> the plasma mass density, and <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msub><mml:mi>B</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> magnetic field on
sides 1 and 2, respectively. This equation indicates whether or not the
interface is unstable to the instability, but not whether the instability
develops nonlinearly. The results showed that the wave fronts observed during
the different tested crossings were unstable to the Kelvin–Helmholtz
instability and could grow nonlinearly.
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M166" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{8.0}{8.0}\selectfont$\displaystyle}?><mml:msup><mml:mfenced open="[" close="]"><mml:mrow><mml:mtext mathvariant="bold">B</mml:mtext><mml:mi>B</mml:mi><mml:mi>k</mml:mi><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>v</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>v</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>&gt;</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mfenced open="[" close="]"><mml:mrow><mml:mtext mathvariant="bold">B</mml:mtext><mml:mi>B</mml:mi><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>B</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>⋅</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mtext mathvariant="bold">B</mml:mtext><mml:mi>B</mml:mi><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>B</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>⋅</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><?xmltex \hack{$\egroup}?></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2531">Having already noted the location of the vortices determined by
<xref ref-type="bibr" rid="bib1.bibx10" id="text.21"/>, we used the same simulation results to test the data mining
capability of our tool. Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the solar wind
conditions used as input for the MHD simulation. It shows the ion density,
temperature, <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>. For most of the time
interval, the IMF is southward.</p>
      <p id="d1e2600">Table <xref ref-type="table" rid="Ch1.T1"/> displays in order the time step, the cluster size (group
of vortices by spatial proximity), the local transformed coordinate system of
the vorticity vector, the vortex coordinates in the geocentric solar
magnetosphere (GSM), the vorticity vector and the value <inline-formula><mml:math id="M173" display="inline"><mml:mi>Q</mml:mi></mml:math></inline-formula>, the second
invariant of the velocity gradient tensor which is used to identify points
where the rotational strength exceeds the strain rate. A total of
86 179 vortex structures were detected (clusters, classes) with a mean of
345 for each time step for the data of 28 July 2006 from 02:15 to 03:55 UT.
This covers the entire simulation space and includes vorticity vectors in all
directions (not preferentially in the <inline-formula><mml:math id="M174" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> direction).
Figure <xref ref-type="fig" rid="Ch1.F4"/> shows the vortices found using our data mining tool
for the same time steps as those in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. Looking at both figures,
we can conclude that all vortices found by <xref ref-type="bibr" rid="bib1.bibx10" id="text.22"/> are found by our
data mining tool. The figure shows the vortex centers by a white dot and the
velocity streamlines surround them with the colors corresponding to the
velocity magnitude. At 03:46 UT two rotations are visible with the
streamline at around <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">13</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. These are vortices with centers near
but not at the <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> cut plane shown in the figure.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e2717">Close-up view of a flux transfer event in the MHD simulation at
02:23 UTC (centered at <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">13</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) seen in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>b. The color lines represent the magnetic field lines, with red
being closed magnetic field lines, gray being “open” field lines (which are
magnetic field lines connected on one side to Earth and on the other side to the
solar wind), and yellow lines being those magnetic field lines of the IMF
in the solar wind. This 2-D display shows the connectivity of the magnetic
field lines of the flux transfer event.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f06.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p id="d1e2768">3-D display of the FTE shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/>. The solar magnetic
field lines of the flux transfer event on the <inline-formula><mml:math id="M182" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M183" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> plane are shown in the
yellow color.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f07.png"/>

        </fig>

      <?pagebreak page1123?><p id="d1e2794">Our tool also yields more information concerning the 3-D extent and duration
of the vortices. Our algorithm identified a coherent structure at the <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>
plane around <inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6.75</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10.75</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> that extends
from <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> that <xref ref-type="bibr" rid="bib1.bibx10" id="text.23"/> described
as a fully developed Kelvin–Helmholtz vortex. Figure <xref ref-type="fig" rid="Ch1.F5"/> shows
the 3-D representation of this coherent structure with the vorticity vectors
shown in black (middle figure) and where they are located in the
magnetosphere, with the <inline-formula><mml:math id="M189" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M190" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M191" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> axes represented in red, green and
blue colors respectively. This shows that our findings are consistent with
the assessment done by <xref ref-type="bibr" rid="bib1.bibx10" id="text.24"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e2915">The extension along the <inline-formula><mml:math id="M192" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> axis of the vortices and FTE presented
in the time step of 02:18 UTC. The velocity magnitude is represented by the
background color and streamlines are represented by arrows (left to right).
The Kelvin–Helmholtz vortex and FTE are emphasized in the first panel by
black circles. The white dots represent the center of the vortices as found
by our algorithm. The FTE is still visible at <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, whereas
the Kelvin–Helmholtz vortex center is last seen at <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f08.png"/>

        </fig>

      <p id="d1e2969"><xref ref-type="bibr" rid="bib1.bibx10" id="text.25"/> described some of the vortical structures seen in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>b as flux transfer events, which are transient flux tubes that
occur after magnetic reconnection on the dayside magnetopause. Any spacecraft
encountering this flux tube would see a change in the magnetic field
characteristics of the magnetopause boundary. These signatures are best
described in boundary normal coordinates (LMN) to the magnetopause, which
were first described by <xref ref-type="bibr" rid="bib1.bibx21" id="text.26"/>. The flux tube exhibits bipolar
signatures in the normal component of the magnetic field when these
magnetosheath field lines not connected to the magnetosphere drape over the
connected flux tube (<xref ref-type="bibr" rid="bib1.bibx15" id="altparen.27"/>). The bipolar signatures normal to the
magnetopause appear in both magnetosheath and magnetospheric magnetic field
lines draped over and under the FTE, because it bulges outward in both
directions. They may also appear within the FTE itself, if there is a
field-aligned current along the axis of the event. <xref ref-type="bibr" rid="bib1.bibx22" id="text.28"/> showed
evidence of such plasma vorticity within FTEs, which was attributed to an
Alfvén wave propagating along the axis.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p id="d1e2987"><inline-formula><mml:math id="M195" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M196" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> cut at 02:23 UTC showing velocity vectors superposed on the
velocity magnitude. It is observed that on the dawnflank region nearby the
observed vortices, the magnetosheath velocity magnitude is higher than that
observed in the solar wind outside the bow shock, higher than
600 km s<inline-formula><mml:math id="M197" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. This diagram was made using the visualization tool
available online through the CCMC website.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f09.png"/>

        </fig>

      <?pagebreak page1124?><p id="d1e3021">We found that our tool could also identify such features of FTEs due to their
vortical structure in the simulation. Using the Space Weather Explorer
visualization tool available at the CCMC, we analyzed information about the
topology of the first vortical structure (center at <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">13</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) seen in Fig. <xref ref-type="fig" rid="Ch1.F2"/>b. Figure <xref ref-type="fig" rid="Ch1.F6"/> shows the
2-D visualization of the tool for the same coordinates and time step of
Fig. <xref ref-type="fig" rid="Ch1.F2"/>b. The color lines represent the magnetic field lines, with red
being closed magnetic field lines, gray being “open” field lines (which are
magnetic field lines connected on one side to Earth and on the other side to the
solar wind), and yellow lines being those magnetic field lines of the IMF
in the solar wind. The figure shows that the vortical structure contains a
mix of “open” magnetic field lines and magnetic field lines from the solar
wind, so we infer that this structure is indeed a flux transfer event.
Figure <xref ref-type="fig" rid="Ch1.F7"/> shows the 3-D window display using the same visualization
tool of the same structure shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/>, which shows the 3-D
structure of the flux transfer event with the solar wind magnetic field lines
shown in yellow color. This suggests that our tool can identify not only
vortices created by the Kelvin–Helmholtz instability but also FTEs, as long
as they exhibit an internal vortical structure (<xref ref-type="bibr" rid="bib1.bibx22" id="altparen.29"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e3079">Close-up of the <inline-formula><mml:math id="M200" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M201" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> cut at 03:46 UT time step of the simulation
where it appears that there no vortices are formed at the boundary. The
quantities represented are the same as in Fig. <xref ref-type="fig" rid="Ch1.F9"/>. The flow
speeds along the boundary are still elevated compared to the flow speed of
the solar wind.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f10.png"/>

        </fig>

      <p id="d1e3104">To study the vortex properties in more depth, we visualized how the structure
of the vortices changed in the <inline-formula><mml:math id="M202" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> direction, which is the axis of rotation
for the targeted vortices. Figure 7 shows the extent of the FTE and vortices
at the time step of 02:18 UTC from <xref ref-type="bibr" rid="bib1.bibx10" id="text.30"/>. The figure shows the 2-D
image for the vortex structures found
with the velocity magnitude represented in color. It covers from
<inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, showing the evolution of these
vortical structures along their axis of rotation. The Kelvin–Helmholtz
vortex and FTE are emphasized on the first diagram by black circles. It can
be seen that the Kelvin–Helmholtz vortex is less extended than the FTE in
this case. The FTE is still visible at <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, whereas the
Kelvin–Helmholtz vortex center is last seen at <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. This
type of analysis measures how large the vortices are, how they change
temporally, and also how elongated they can be.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p id="d1e3194">With our algorithm we find that there are vortices present at the
<inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(a)</bold> and the <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> coordinate
<bold>(b)</bold> at 03:46 UTC. The center of the vortices is represented by the
white dots.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f11.png"/>

        </fig>

      <p id="d1e3245">These figures verify that our VIA is able to locate vortices created by the
Kelvin–Helmholtz instability and vortical structures formed by bursty
magnetic reconnection in the form of flux transfer events. This actually
demonstrates that at least some FTEs have vortical velocity structures. Our
tool can be used to find how common these vortical FTE structures are.
Scientific modeling of the magnetosphere is of special importance since
observational data are sparse and relegated to point observations. However, as
numerical models increase in spatial resolution, analysis of their results
becomes more difficult and time consuming, and it requires an automated
search mechanism to focus on important transient features for model
validation and inter-comparison. This is a great data mining tool for
research purposes since it minimizes the time spent searching for such
signatures, in this case on the Earth's magnetosphere.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><caption><p id="d1e3250">Close-up of the <inline-formula><mml:math id="M209" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M210" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> cut at 03:55 UTC when no vortex is visible.
Quantities shown are the same as the ones in Fig. <xref ref-type="fig" rid="Ch1.F9"/>. The flow
speeds along the boundary are not as high as those on the solar wind.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f12.png"/>

        </fig>

</sec>
<?pagebreak page1125?><sec id="Ch1.S2.SS2">
  <title>Flow acceleration associated with vortices</title>
      <p id="d1e3282">Figure <xref ref-type="fig" rid="Ch1.F9"/> shows flow velocity magnitudes at 02:23 UTC, when the
vortex at <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">13</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was identified.
Magnetosheath velocities reach values higher than 600 km s<inline-formula><mml:math id="M213" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> near the
vortex location, which is greater than the solar wind speed outside of the
bow shock. Two questions arise: (1) is the Kelvin–Helmholtz vortex structure
causing this kind of localized acceleration on the magnetosheath, or (2) is
magnetic reconnection on the dayside causing these localized flow
accelerations? Past studies have found magnetosheath flow accelerating near
the magnetopause when the IMF was northward. <xref ref-type="bibr" rid="bib1.bibx19" id="text.31"/> attributed this
acceleration to the magnetic forces associated with draping of the field
lines around the magnetopause. <xref ref-type="bibr" rid="bib1.bibx1" id="text.32"/> also proposed draping to be the
source of the magnetosheath flow acceleration. On the other hand,
<xref ref-type="bibr" rid="bib1.bibx22" id="text.33"/> suggested that the presence of Kelvin–Helmholtz waves was
made unstable due to the super-Alfvénic velocity shear occurring in
reconnection accelerated flows under southward IMF. Our case is for southward IMF, and we see the accelerated flows
close to the magnetosheath side of the vortices found.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><caption><p id="d1e3349">Output from our code that shows the velocity magnitude as the
background color with no vortices detected at 03:55 UTC on the <inline-formula><mml:math id="M214" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M215" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> plane or
close by.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://angeo.copernicus.org/articles/36/1117/2018/angeo-36-1117-2018-f13.png"/>

        </fig>

      <p id="d1e3372">To determine whether the accelerated flows are only seen when the vortices are
present, we need to compare times where vortices are found near the boundary
with times when they are not. No vortex is visible in the diagram shown in
Fig. <xref ref-type="fig" rid="Ch1.F10"/> at the <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> cut plane using the visualization
tool available through the CCMC website. However, speeds around the
magnetosheath reach values similar to those in the solar wind speed, around
500–600 km s<inline-formula><mml:math id="M217" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The time step was run through our algorithm and some
vortices were present nearby to the equatorial plane like the ones shown in
Fig. <xref ref-type="fig" rid="Ch1.F11"/> at <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (a) and at
<inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (b). Consequently, the high-speed flows at the
magnetopause are found to be associated with the presence of vortices.</p>
      <p id="d1e3440">Figure <xref ref-type="fig" rid="Ch1.F12"/> shows the flows at 03:55 UT (close to the end of the
simulation run), when no vortex is visible on the boundary. This plot was
made using the visualization tools available online through the CCMC. Flow
speeds are definitely high at the magnetopause as represented by the
background color, but do not reach solar wind values as seen by the bow shock
separation. This time step was searched by the double scrutiny test of the
Lambda 2 method. No vortex was found in the vicinity of the <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> cut plane
for this time step. Figure <xref ref-type="fig" rid="Ch1.F13"/> shows the output from our VIA where no
vortex was found at the <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:mi>Z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> cut plane.</p>
      <p id="d1e3472">These results could indicate that vortices could contribute to such localized
acceleration as they convect antisunward. By contrast, <xref ref-type="bibr" rid="bib1.bibx22" id="text.34"/>
argued that the Kelvin–Helmholtz waves were driven by the super-Alfvénic
shear created by the accelerated reconnected flows. In our case, flow is
accelerated to speeds equal to or higher than the solar wind speed when
vortices are present at the boundary. Presumably, this type of plasma
acceleration could be a combination of the Alfvénic outflow created by
magnetic reconnection and the presence of the Kelvin–Helmholtz vortices at
the boundary. In Fig. <xref ref-type="fig" rid="Ch1.F13"/> it is noticeable that the speed at the
magnetosheath close to the boundary is not of the order of the solar wind
speed, which in this case is around 650 km s<inline-formula><mml:math id="M222" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, but slightly slower
(about 480 to 500 km s<inline-formula><mml:math id="M223" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). At the flank, the speeds are considered
high for the magnetosheath flow. Thus, the reconnection process could be
accelerating the flow through the draping of the reconnected magnetic field
lines, making the boundary unstable to the Kelvin–Helmholtz instability. The
vortices can then develop and increase the acceleration even further.
Inspection shows that the <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:mi>J</mml:mi><mml:mo>×</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:math></inline-formula> force and the pressure gradient are higher when vortices are
present. The pressure gradient forces are greater than the <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:mi>J</mml:mi><mml:mo>×</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:math></inline-formula> forces, and consequently the
acceleration seen in the magnetosheath is the fluid dynamic effect of
enhanced flow velocities over ridges in the magnetopause surface. An
animation with all the frames in the simulation referring to the same
coordinates (<inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mi>X</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mi>Y</mml:mi><mml:mo>&lt;</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and background as Fig. 4 is included as Supplement. The animation shows the evolution of the vortices as also the
increase in speed near the boundary that happens when the vortices are
present.</p>
</sec>
</sec>
<?pagebreak page1126?><sec id="Ch1.S3" sec-type="conclusions">
  <title>Conclusions and future work</title>
      <p id="d1e3594">The large data sets that are now available through magnetospheric simulations
and also spacecraft missions require an automated search algorithm to focus
on specific areas or features such as transients on the magnetopause
boundary. It is really difficult to visually identify small-scale features in
a 3-D vector field, both from the aspect of visualization and sheer data
volume, without an automatic search algorithm like the one described in this
paper.</p>
      <p id="d1e3597">We have leveraged a technique used in fluid dynamics to automatically detect
vortical structure and elucidate its properties. The algorithm provides
information on the 3-D properties and extent of the identified vortical
structures. We have identified vortical structures not only attributed to the
Kelvin–Helmholtz instability, but to flux transfer events. The magnetic
topology seen in this vortical structures confirms this.</p>
      <p id="d1e3600">Our data demonstrate that the algorithm can identify vortical structures in
a simulation based on solar wind conditions where Kelvin–Helmholtz vortices
were found in observations by the Cluster mission for southward IMF
(<xref ref-type="bibr" rid="bib1.bibx10" id="altparen.35"/>). This is valuable feedback to the theory and scientific
understanding of the phenomena, with the huge advantage that the simulation
data offer a high temporal- and spatial-resolution view. Our technique thus
provides a means to exploit the high temporal and spatial resolution of
simulation data and derive feature-specific information to feed back into the
science discovery process.</p>
      <p id="d1e3606">We have also demonstrated that the Kelvin–Helmholtz vortices, analyzed and
formed under southward IMF for the case shown, are associated with the
accelerated flows observed on the magnetosheath side, with speeds higher than
the solar wind speed observed at the bow shock. No such accelerated flows were
visible when no vortices were present at the boundary. These accelerated
flows can be attributed to the draping of the magnetic field lines in
conjunction with the super-Alfvénic shear occurring at the boundary due
to the Kelvin–Helmholtz vortices. Inspection shows that the <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:mi>J</mml:mi><mml:mo>×</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:math></inline-formula> force and the pressure
gradient are higher when the vortices are present.</p>
      <p id="d1e3622">In the near future, we plan to leverage this capability to include the
magnetic field topology and delve into the specific vortex characteristics to
increase the science return from the data. We also want to compare the
simulation results with in situ observations by different spacecraft data for
algorithm validation. One promising application of our VIA is the possibility
to search vortical structures in data from missions like the Magnetospheric
Multiscale Mission (MMS), in which four satellites fly in a tetrahedral formation
with a small separation.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e3629">Simulation results were provided by the Community
Coordinated Modeling Center at Goddard Space Flight Center through their
public Runs on Request system (<uri>http://ccmc.gsfc.nasa.gov</uri>). The
Block-Adaptive-Tree-Solarwind-Roe-Upwind-Scheme (BATS-R-US; ID
KyoungJoo_Hwang_101309_1a) Model was developed by Tamas Gombosi et al. at
the Center for Space Environment Modeling, University of Michigan.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e3635">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/angeo-36-1117-2018-supplement" xlink:title="zip">https://doi.org/10.5194/angeo-36-1117-2018-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p id="d1e3645">YMCV wrote
the manuscript, helped with the algorithm development and analyzed the
algorithm output data. VLK developed the algorithm, processed the simulation
data, created custom visualizations for the algorithm results, and helped
with the editing of the manuscript. DGS helped with the analysis and editing
of the manuscript. KJH is the author of a previous
analysis used in the paper. LR helped with the simulations used.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e3651">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3657">This work was supported by the FY2015 Science Innovation Fund from NASA
Headquarters. The authors would like to thank Jay Friedlander for his amazing help with the manuscript figures.  <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?><?xmltex \hack{\hspace*{4mm}}?> The topical editor, Elias Roussos, thanks two anonymous
referees for help in evaluating this paper.</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Chen et al.(1993)</label><mixed-citation>
Chen, S.-H., Kivelson, M. G., Gosling, J. T., Walker, R. J., and Lazarus,
A. J.: Anomalous aspects of magnetosheath flow and of the shape and
oscillations of the magnetopause during an interval of strongly northward
interplanetary magnetic field, J. Geophys. Res., 98, 5727–5742, 1993.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Collado-Vega et al.(2007)</label><mixed-citation>Collado-Vega, Y. M., Kessel, R. L., Shao, X., and Boller, R. A.: MHD flow
visualization of magnetopause boundary region<?pagebreak page1129?> vortices observed during
high-speed streams, J. Geophys. Res., 112, A06213, <ext-link xlink:href="https://doi.org/10.1029/2006JA012104" ext-link-type="DOI">10.1029/2006JA012104</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Collado-Vega et al.(2013)</label><mixed-citation>Collado-Vega, Y. M., Kessel, R. L., Sibeck, D. G., Kalb, V. L., Boller, R.
A., and Rastaetter, L.: Comparison between vortices created and evolving
during fixed and dynamic solar wind conditions, Ann. Geophys., 31,
1463–1483, <ext-link xlink:href="https://doi.org/10.5194/angeo-31-1463-2013" ext-link-type="DOI">10.5194/angeo-31-1463-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Fujimoto et al.(2003)</label><mixed-citation>
Fujimoto, M., Tonooka, T., and Mukai, T.: Vortex-Like Fluctuations in the
Magnetotail Flanks and their Possible Roles in Plasma Transport, in Earth's
Low-Latitude Boundary Layer, American Geophysical Union, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Gombosi et al.(2004)</label><mixed-citation>
Gombosi, T. I., Powell, K. G., De Zeeuw, D. L., Clauer, C. R., Hansen, K. C.,
Manchester, W. B., Ridley, A. J., Roussev, I. I., Sokolov, I. V., Stout,
Q. F., and Toth, G.: Solution-adaptive magnetohydrodynamics for space
plasmas: Sun-to-Earth simulations, Comput. Sci. Eng., 6,
14–35, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Hasegawa(1975)</label><mixed-citation>
Hasegawa, A.: Plasma Instabilities and Nonlinear Effects, Springer, Verlag,
1975.</mixed-citation></ref>
      <ref id="bib1.bibx7"><?xmltex \def\ref@label{{Hasegawa et~al.(2004{\natexlab{a}})}}?><label>Hasegawa et al.(2004a)</label><mixed-citation>
Hasegawa, H., Fujimoto, M., Phan, T.-D., Rème, H., Balogh, A., Dunlop,
M. W., Hashimoto, C., and TanDokoro, R.: Transport of solar wind into Earth's
magnetosphere through rolled-up Kelvin-Helmholtz vortices, Nature, 430,
755–758, 2004a.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Hasegawa et al.(2006)</label><mixed-citation>Hasegawa, H., Fujimoto, M., Takagi, K., Saito, Y., Mukai, T., and Rème,
H.: Single-spacecraft detection of rolled-up Kelvin-Helmholtz vortices at the
flank magnetopause, J. Geophys. Res., 111, A09203,
<ext-link xlink:href="https://doi.org/10.1029/2006JA011728" ext-link-type="DOI">10.1029/2006JA011728</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Hunt et al.(1988)</label><mixed-citation>
Hunt, J., Wiley, A., and Moin, P.: Eddies, Stream, and Convergence Zones in
Turbulent Flows, Studying Turbulence Using Numerical Simulation Databases,
1, 193–208, 1988.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Hwang et al.(2011)</label><mixed-citation>Hwang, K.-J., Kuznetsova, M. M., Sahraoui, F., Goldstein, M. L., Lee, E., and
Parks, G. K.: Kelvin-Helmholtz waves under southward interplanetary magnetic
field, J. Geophys. Res., 116, A08210, <ext-link xlink:href="https://doi.org/10.1029/2011JA016596" ext-link-type="DOI">10.1029/2011JA016596</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Hwang et al.(2012)</label><mixed-citation>Hwang, K.-J., Goldstein, M. L., Kuznetsova, M. M., Wang, Y., Viñas, A.
F., and Sibeck, D. G.: The first in
situ observation of Kelvin-Helmholtz waves at high-latitude magnetopause
during strongly dawnward interplanetary magnetic field conditions, J.
Geophys. Res., 117, A08233, <ext-link xlink:href="https://doi.org/10.1029/2011JA017256" ext-link-type="DOI">10.1029/2011JA017256</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Jeong and Hussain(1995)</label><mixed-citation>Jeong, J. and Hussain, F.: On the Identification of a Vortex, J. Fluid
Mech., 285, 69–94, 1995.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx13"><label>Kavosi and Raeder(2015)</label><mixed-citation>Kavosi, S. and Raeder, J.: Ubiquity of Kelvin–Helmholtz waves at Earth's
magnetopause, Nat. Commun., 6, 7019, <ext-link xlink:href="https://doi.org/10.1038/ncomms8019" ext-link-type="DOI">10.1038/ncomms8019</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Kivelson and Chen(1995)</label><mixed-citation>
Kivelson, M. G. and Chen, S. H.: The Magnetopause: Surface waves and
instabilities and their possible dynamical consequences, vol. 90 of
Geophys. Monogr. Ser., chap. Physics of the Magnetopause,
American Geophysical Union,  257–268, 1995.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Le et al.(1993)</label><mixed-citation>
Le, G., Russell, C. T., and Kuo, H.: Flux transfer events: spontaneous or
driven?, Geophys. Res. Lett., 20, 791–794, 1993.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Miura(1984)</label><mixed-citation>
Miura, A.: Anomalous transport by magnetohydrodynamic Kelvin-Helmholtz
instabilities in the solar wind-magnetosphere interaction, J. Geophys. Res.,
89, 801–818, 1984.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Nakamura and Fujimoto(2006)</label><mixed-citation>
Nakamura, T. and Fujimoto, M.: Magnetic reconnection within MHD-scale
Kelvin-Helmholtz vortices triggered by electron inertial effects,   Elsevier, 37, 522–526, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Nykyri and Otto(2001)</label><mixed-citation>
Nykyri, K. and Otto, A.: Plasma transport at the magnetospheric boundary due to
reconnection in Kelvin-Helmholtz vortices, Geophys. Res. Lett., 28,
3565–3568, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Phan et al.(1997)</label><mixed-citation>
Phan, T. D., Larson, D., McFadden, J., Lin, R. P., Carlson, C., Moyer, M., and
Paularena, K. I.: Low-latitude dusk flank magnetosheath, magnetopause, and
boundary layer for low magnetic shear: Wind observations, J. Geophys. Res.,
102, 19883–19895, 1997.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Powell et al.(1999)</label><mixed-citation>
Powell, K., Roe, P., Linde, T., Gombosi, T. I., and Zeeuw, D. L. D.: A
solution-adaptive upwind scheme for ideal magnetohydrodynamics, J. Comp.
Phys., 154, 284–309, 1999.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Russell and Elphic(1978)</label><mixed-citation>
Russell, C. T. and Elphic, R. C.: Initial ISEE magnetometer results:
Magnetopause observations, Space Sci. Rev., 22, 681–715, 1978.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Saunders et al.(1984)</label><mixed-citation>
Saunders, M. A., Russell, C. T., and Sckopke, N.: Flux transfer events: Scale
size and interior structure, Geophys. Res. Lett., 11, 131–134, 1984.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Takagi et al.(2006)</label><mixed-citation>Takagi, K., Hashimoto, C., Hasegawa, H., Fujimoto, M., and TanDokoro, R.:
Kelvin-Helmholtz
instability in a magnetotail flank-like geometry: Three dimensional MHD
simulations, J. Geophys. Res., 111,  A08202, <ext-link xlink:href="https://doi.org/10.1029/2006JA011631" ext-link-type="DOI">10.1029/2006JA011631</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx24"><?xmltex \def\ref@label{{T{\'{o}}th et~al.(2012)}}?><label>Tóth et al.(2012)</label><mixed-citation>
Tóth, G., Van der Holst, B., Sokolov, I. V., De Zeeuw, D. L., Gombosi,
T. I., Fang, F., Manchester, W. B., Meng, X., Najib, D., Powell, K. G.,
Stout, Q. F., Glocer, A., Ma, Y.-J., and Opher, M.: Adaptive Numerical
Algorithms in Space Weather Modeling, J. Comput. Phys., 231, 870–903,
2012.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>Data mining for vortices on the Earth's magnetosphere – algorithm application for detection and analysis</article-title-html>
<abstract-html><p>Unsteady processes in the solar wind–magnetosphere interaction,
such as vortices developed at the magnetopause boundary by the
Kelvin–Helmholtz instability, may contribute to the process of mass, momentum
and energy transfer into the Earth's magnetosphere. The research described in
this paper validates an algorithm to automatically detect and characterize
vortices based on velocity data from simulations. The vortex identification
algorithm (VIA) systematically searches the 3-D velocity fields to
identify critical points where the magnitude of the velocity vector vanishes.
The velocity gradient tensor is computed and its invariants are used to
assess vortex structure in the flow field. We use the Community Coordinated
Modeling Center (CCMC) Runs on Request capability to create a series of model
runs initialized from the conditions observed by the Cluster mission in the
Hwang et al. (2011) analysis of Kelvin–Helmholtz vortices observed during
southward interplanetary magnetic field (IMF) conditions. We analyze further
the properties of the vortices found in the runs, including the velocity
changes within their motion across the magnetosheath. We also demonstrate the
potential of our tool to identify and characterize other transient features
(e.g., flux transfer events, FTEs) with vortical internal structures. We find
that the vortices are associated with flows on the magnetosheath side of the
magnetopause that reach speeds greater than the solar wind speed at the
bow shock.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Chen et al.(1993)</label><mixed-citation>
Chen, S.-H., Kivelson, M. G., Gosling, J. T., Walker, R. J., and Lazarus,
A. J.: Anomalous aspects of magnetosheath flow and of the shape and
oscillations of the magnetopause during an interval of strongly northward
interplanetary magnetic field, J. Geophys. Res., 98, 5727–5742, 1993.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Collado-Vega et al.(2007)</label><mixed-citation>
Collado-Vega, Y. M., Kessel, R. L., Shao, X., and Boller, R. A.: MHD flow
visualization of magnetopause boundary region vortices observed during
high-speed streams, J. Geophys. Res., 112, A06213, <a href="https://doi.org/10.1029/2006JA012104" target="_blank">https://doi.org/10.1029/2006JA012104</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Collado-Vega et al.(2013)</label><mixed-citation>
Collado-Vega, Y. M., Kessel, R. L., Sibeck, D. G., Kalb, V. L., Boller, R.
A., and Rastaetter, L.: Comparison between vortices created and evolving
during fixed and dynamic solar wind conditions, Ann. Geophys., 31,
1463–1483, <a href="https://doi.org/10.5194/angeo-31-1463-2013" target="_blank">https://doi.org/10.5194/angeo-31-1463-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Fujimoto et al.(2003)</label><mixed-citation>
Fujimoto, M., Tonooka, T., and Mukai, T.: Vortex-Like Fluctuations in the
Magnetotail Flanks and their Possible Roles in Plasma Transport, in Earth's
Low-Latitude Boundary Layer, American Geophysical Union, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Gombosi et al.(2004)</label><mixed-citation>
Gombosi, T. I., Powell, K. G., De Zeeuw, D. L., Clauer, C. R., Hansen, K. C.,
Manchester, W. B., Ridley, A. J., Roussev, I. I., Sokolov, I. V., Stout,
Q. F., and Toth, G.: Solution-adaptive magnetohydrodynamics for space
plasmas: Sun-to-Earth simulations, Comput. Sci. Eng., 6,
14–35, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Hasegawa(1975)</label><mixed-citation>
Hasegawa, A.: Plasma Instabilities and Nonlinear Effects, Springer, Verlag,
1975.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Hasegawa et al.(2004a)</label><mixed-citation>
Hasegawa, H., Fujimoto, M., Phan, T.-D., Rème, H., Balogh, A., Dunlop,
M. W., Hashimoto, C., and TanDokoro, R.: Transport of solar wind into Earth's
magnetosphere through rolled-up Kelvin-Helmholtz vortices, Nature, 430,
755–758, 2004a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Hasegawa et al.(2006)</label><mixed-citation>
Hasegawa, H., Fujimoto, M., Takagi, K., Saito, Y., Mukai, T., and Rème,
H.: Single-spacecraft detection of rolled-up Kelvin-Helmholtz vortices at the
flank magnetopause, J. Geophys. Res., 111, A09203,
<a href="https://doi.org/10.1029/2006JA011728" target="_blank">https://doi.org/10.1029/2006JA011728</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Hunt et al.(1988)</label><mixed-citation>
Hunt, J., Wiley, A., and Moin, P.: Eddies, Stream, and Convergence Zones in
Turbulent Flows, Studying Turbulence Using Numerical Simulation Databases,
1, 193–208, 1988.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Hwang et al.(2011)</label><mixed-citation>
Hwang, K.-J., Kuznetsova, M. M., Sahraoui, F., Goldstein, M. L., Lee, E., and
Parks, G. K.: Kelvin-Helmholtz waves under southward interplanetary magnetic
field, J. Geophys. Res., 116, A08210, <a href="https://doi.org/10.1029/2011JA016596" target="_blank">https://doi.org/10.1029/2011JA016596</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Hwang et al.(2012)</label><mixed-citation>
Hwang, K.-J., Goldstein, M. L., Kuznetsova, M. M., Wang, Y., Viñas, A.
F., and Sibeck, D. G.: The first in
situ observation of Kelvin-Helmholtz waves at high-latitude magnetopause
during strongly dawnward interplanetary magnetic field conditions, J.
Geophys. Res., 117, A08233, <a href="https://doi.org/10.1029/2011JA017256" target="_blank">https://doi.org/10.1029/2011JA017256</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Jeong and Hussain(1995)</label><mixed-citation>
Jeong, J. and Hussain, F.: On the Identification of a Vortex, J. Fluid
Mech., 285, 69–94, 1995.

</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Kavosi and Raeder(2015)</label><mixed-citation>
Kavosi, S. and Raeder, J.: Ubiquity of Kelvin–Helmholtz waves at Earth's
magnetopause, Nat. Commun., 6, 7019, <a href="https://doi.org/10.1038/ncomms8019" target="_blank">https://doi.org/10.1038/ncomms8019</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Kivelson and Chen(1995)</label><mixed-citation>
Kivelson, M. G. and Chen, S. H.: The Magnetopause: Surface waves and
instabilities and their possible dynamical consequences, vol. 90 of
Geophys. Monogr. Ser., chap. Physics of the Magnetopause,
American Geophysical Union,  257–268, 1995.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Le et al.(1993)</label><mixed-citation>
Le, G., Russell, C. T., and Kuo, H.: Flux transfer events: spontaneous or
driven?, Geophys. Res. Lett., 20, 791–794, 1993.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Miura(1984)</label><mixed-citation>
Miura, A.: Anomalous transport by magnetohydrodynamic Kelvin-Helmholtz
instabilities in the solar wind-magnetosphere interaction, J. Geophys. Res.,
89, 801–818, 1984.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Nakamura and Fujimoto(2006)</label><mixed-citation>
Nakamura, T. and Fujimoto, M.: Magnetic reconnection within MHD-scale
Kelvin-Helmholtz vortices triggered by electron inertial effects,   Elsevier, 37, 522–526, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>Nykyri and Otto(2001)</label><mixed-citation>
Nykyri, K. and Otto, A.: Plasma transport at the magnetospheric boundary due to
reconnection in Kelvin-Helmholtz vortices, Geophys. Res. Lett., 28,
3565–3568, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Phan et al.(1997)</label><mixed-citation>
Phan, T. D., Larson, D., McFadden, J., Lin, R. P., Carlson, C., Moyer, M., and
Paularena, K. I.: Low-latitude dusk flank magnetosheath, magnetopause, and
boundary layer for low magnetic shear: Wind observations, J. Geophys. Res.,
102, 19883–19895, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Powell et al.(1999)</label><mixed-citation>
Powell, K., Roe, P., Linde, T., Gombosi, T. I., and Zeeuw, D. L. D.: A
solution-adaptive upwind scheme for ideal magnetohydrodynamics, J. Comp.
Phys., 154, 284–309, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Russell and Elphic(1978)</label><mixed-citation>
Russell, C. T. and Elphic, R. C.: Initial ISEE magnetometer results:
Magnetopause observations, Space Sci. Rev., 22, 681–715, 1978.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Saunders et al.(1984)</label><mixed-citation>
Saunders, M. A., Russell, C. T., and Sckopke, N.: Flux transfer events: Scale
size and interior structure, Geophys. Res. Lett., 11, 131–134, 1984.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Takagi et al.(2006)</label><mixed-citation>
Takagi, K., Hashimoto, C., Hasegawa, H., Fujimoto, M., and TanDokoro, R.:
Kelvin-Helmholtz
instability in a magnetotail flank-like geometry: Three dimensional MHD
simulations, J. Geophys. Res., 111,  A08202, <a href="https://doi.org/10.1029/2006JA011631" target="_blank">https://doi.org/10.1029/2006JA011631</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Tóth et al.(2012)</label><mixed-citation>
Tóth, G., Van der Holst, B., Sokolov, I. V., De Zeeuw, D. L., Gombosi,
T. I., Fang, F., Manchester, W. B., Meng, X., Najib, D., Powell, K. G.,
Stout, Q. F., Glocer, A., Ma, Y.-J., and Opher, M.: Adaptive Numerical
Algorithms in Space Weather Modeling, J. Comput. Phys., 231, 870–903,
2012.
</mixed-citation></ref-html>--></article>
